BAC Information

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BAC

Clone NameB6Ng01-133K17
ChromosomeY (Build37)3 (Build37)
Map Location 1,544,849 - 1,544,898108,211,884 - 108,212,986
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
Downstream geneLOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133K17.bB6Ng01-133K17.g
ACCDH934158DH934159
length1561,099
definitionDH934158|Mus musculus domesticus DNA, BAC clone: B6Ng01-133K17, 5' end.DH934159|Mus musculus domesticus DNA, BAC clone: B6Ng01-133K17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,544,849 - 1,544,898)(108,211,884 - 108,212,986)
sequence
tgggaaagggtggagcagtcttcccagccttaagcacaccaactggctgt
ccaaaccagtggtaagcccttgaaaacagacagagcaagttgtcctgaca
tacttggagagagagagagagagagagagagagagagagagaaagagaga
gagaga
gaattctgggaggcagagaaagggaaatggcttggaaggctataggggtg
ttcctagttaacacagcgctttacacataatgagtgttcagtaaaaacta
agatgctcatgggaatcccttgtacataaaagtatcttgaaaacatggca
gcaagctaggcgatggtgatactcgactttaatactagtgctcaggaggc
agaggcgggaggatctccgagttcaagggcagcctggtctacagagccaa
gttccaggacagacagccagagctacatagaaaaaccttatcttgaaaac
ccaaaaggaaaacacacacacacacacacacacacacacacacacacaca
cacacagagcaaactctccaatcagatgcaaaatatgacatccaagtggg
ataggatgggagccagtgtcactgaggcagaaaagagatatggagatatg
ggaccctacatgtcacacttcgagtggctgctaccttgggcatactgaag
gcaggcacccatctcagcgatgccctgggcccactgccgacctgccctgc
ggccctcactgctgtggtcacttttgttcctcctgctttgcccagagtca
tggtcctccaagccctctagcctgcccatgggtcaccatctcactgctct
gctaccttttagaagcagggttcaggagctgatgtcacagcccagtgttt
tctggataggatgttctctccagacagaaagcaacaacacagggctctac
aaacagtgctcctggaccaacaagcaagagaatctctgccatcccctgtt
tctgggagcaacactccttgcatgatgttgtccaccaacccaggcccgtc
tgtgccccttactcagcatgtctcttgcttcccatctggcccaccatctg
tggccacctgcccctctgctaatgtccccatcccagcaaccaacccattg
ctctctctccttctctttgtccttctccgtgcttgctcgggtcactccta
gtgcaaaggcaggttgggtaatagaagtggccggtacattgccctgattt
gtttaacagaagagaaagctggggtaagcttctgacccagtaaatacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1544849_1544898
seq2: B6Ng01-133K17.b_162_211

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGA  50

seq1: chr3_108211884_108212986
seq2: B6Ng01-133K17.g_68_1166

seq1  GAATTCTGGGAGGCAGAGAAAGGGAAATGGCTTGGAAGGCTATAGGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAGGCAGAGAAAGGGAAATGGCTTGGAAGGCTATAGGGGTG  50

seq1  TTCCTAGTTAACACAGCGCTTTACACATAATGAGTGTTCAGTAAAAACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGTTAACACAGCGCTTTACACATAATGAGTGTTCAGTAAAAACTA  100

seq1  AGATGCTCATGGGAATCCCTTGTACATAAAAGTATCTTGAAAACATGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTCATGGGAATCCCTTGTACATAAAAGTATCTTGAAAACATGGCA  150

seq1  GCAAGCTAGGCGATGGTGATACTCGACTTTAATACTAGTGCTCAGGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTAGGCGATGGTGATACTCGACTTTAATACTAGTGCTCAGGAGGC  200

seq1  AGAGGCGGGAGGATCTCCGAGTTCAAGGGCAGCCTGGTCTACAGAGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCGGGAGGATCTCCGAGTTCAAGGGCAGCCTGGTCTACAGAGCCAA  250

seq1  GTTCCAGGACAGACAGCCAGAGCTACATAGAAAAACCTTATCTTGAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGACAGACAGCCAGAGCTACATAGAAAAACCTTATCTTGAAAAC  300

seq1  CCAAAAGGAAAACACACACACACACACACACACACACACACACACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGAAAACACACACACACACACACACACACACACACACACACACA  350

seq1  CACACAGAGCAAACTCTCCAATCAGATGCAAAATATGACATCCAAGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAGCAAACTCTCCAATCAGATGCAAAATATGACATCCAAGTGGG  400

seq1  ATAGGATGGGAGCCAGTGTCACTGAGGCAGAAAAGAGATATGGAGATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATGGGAGCCAGTGTCACTGAGGCAGAAAAGAGATATGGAGATATG  450

seq1  GGACCCTACATGTCACACTTCGAGTGGCTGCTACCTTGGGCATACTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTACATGTCACACTTCGAGTGGCTGCTACCTTGGGCATACTGAAG  500

seq1  GCAGGCACCCATCTCAGCGATGCCCTGGGCCCACTGCCGACCTGCCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCACCCATCTCAGCGATGCCCTGGGCCCACTGCCGACCTGCCCTGC  550

seq1  GGCCCTCACTGCTGTGGTCACTTTTGTTCCTCCTGCTTTGCCCAGAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCACTGCTGTGGTCACTTTTGTTCCTCCTGCTTTGCCCAGAGTCA  600

seq1  TGGTCCTCCAAGCCCTCTAGCCTGCCCATGGGTCACCATCTCACTGCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTCCAAGCCCTCTAGCCTGCCCATGGGTCACCATCTCACTGCTCT  650

seq1  GCTACCTTTTAGAAGCAGGGTTCAGGAGCTGATGTCACAGCCCAGTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTTTTAGAAGCAGGGTTCAGGAGCTGATGTCACAGCCCAGTGTTT  700

seq1  TCTGGATAGGATGTTCCCTCCAGACAGAAAGCAACAACACAGGGCTCTAC  750
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTGGATAGGATGTTCTCTCCAGACAGAAAGCAACAACACAGGGCTCTAC  750

seq1  AAACAGTGCTCCTGGACCAACAAGCAAGAGAATCTCTGCCATCCCCTGGT  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAACAGTGCTCCTGGACCAACAAGCAAGAGAATCTCTGCCATCCCCTGTT  800

seq1  TCTGGGAAGCAACACTCC-TGCATGATGTTGTCCACCAACCCAGGCCCGT  849
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTGGG-AGCAACACTCCTTGCATGATGTTGTCCACCAACCCAGGCCCGT  849

seq1  CTGTGCCCCTTACTCAGCATGTCTCTTGCTTCCCATCTGGCCCACCATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCCCTTACTCAGCATGTCTCTTGCTTCCCATCTGGCCCACCATCT  899

seq1  GTGGCCACCTGCCCCTCTGCTAATGTCCCCATCCCAGCAACCAACCCATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCACCTGCCCCTCTGCTAATGTCCCCATCCCAGCAACCAACCCATT  949

seq1  GCTCTCTCTCCTTCCTCTTTGTCCTTCTCCCGTGCCTTGCTCGGGTCACT  999
      ||||||||||||| |||||||||||||| ||||| |||||||||||||||
seq2  GCTCTCTCTCCTT-CTCTTTGTCCTTCT-CCGTG-CTTGCTCGGGTCACT  996

seq1  CCTAAGGTGCAAAGGCAGGTTGGG-AATAGGAGTGGCCGGTACATTG-CC  1047
      ||||  |||||||||||||||||| ||||| |||||||||||||||| ||
seq2  CCTA--GTGCAAAGGCAGGTTGGGTAATAGAAGTGGCCGGTACATTGCCC  1044

seq1  TGATTTGTTTTAGACAGAAGAGAGAGCTGGGGTAGGC-TCTGACCCAGGA  1096
      ||||||||||   |||||||||| |||||||||| || |||||||||| |
seq2  TGATTTGTTT--AACAGAAGAGAAAGCTGGGGTAAGCTTCTGACCCAGTA  1092

seq1  AATACCA  1103
      |||||||
seq2  AATACCA  1099