BAC Information

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BAC

Clone NameB6Ng01-134D11
ChromosomeY (Build37)4 (Build37)
Map Location 1,870,461 - 1,870,57552,108,756 - 52,109,826
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134D11.bB6Ng01-134D11.g
ACCDH934570DH934571
length3051,085
definitionDH934570|Mus musculus domesticus DNA, BAC clone: B6Ng01-134D11, 5' end.DH934571|Mus musculus domesticus DNA, BAC clone: B6Ng01-134D11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,461 - 1,870,575)(52,108,756 - 52,109,826)
sequence
aaattgatacattcttatctccttgtacaaaactgcaagtccaagtggat
catgaaactccacataaaaggagatacactgaaactaataagaaaaagtg
gggaagagcctggagcacatgggcagagggggaaatttcctagacagaag
accattagcttattctctaagatcaagaattgacaaatgcctagtcggcc
atccctgcaaagagaggcccattggacttgcaaactttatatgccccagt
acaggggaacgccagggccaaaaaggggaagtgggtgggtaggggattgt
ggggg
gaattcttacctgctacccgggtgctcatcaaccacctcctgaagttgtt
aaaacacactagaagtttgttgagtctacatattcagcaagttagtgcct
tgtctctctttttaatttttgcaagaatcatgggcagggtgaatgtagat
ttttgtttttcttgcatccaatttagaggattcacgtttcctatatactc
atctacaaaatcacagctgctctagctagcggaaactaactccagtgaca
ttcttgagatatttggagatattgttattacccatctaatgtgaggaaaa
aaagtccctcgaaggtcagttaatgattatgatataaaggtatgctttcg
gtgttggctgataggggaatgacagcccaggggcttcatttctggatcat
tatttcttggcctgtaacctcagaaagcaatttgggttcaaaatcatcta
tattgtgaggccaaaagctttgaactgtttacagtctgtgggaacgttct
gattccaattctgccacgaaggatatttatttccaggataagatacactg
tgtcatatttcttagtgatatttttaaacatctttttaaaaaaattagat
attttctttatttacatttcaaatgttatttcctttccaggtttcacctc
tgaaaaccctcatcccatttcctctcccctgctcaccaacctaccctctc
ctgctttcctgtcctggcattcccctacactggcatagaaccttcacagg
accaagagcctctcttctcattaacgactgacaaggccatcctctgctac
atatgcagctggagtgatgggcccctccatgtgtactctttggttggtgt
ttagtccctgggagcttctgggggtactggttggttcatattgttgtctt
tctatgggtctgcagctccttcaggtccttcagtcctttctctagctctt
cactagggaccttgtgctcagtcaatggtggcagagagcatctccctctg
tatttttcaggcactggcagacctctcagagaatagctataatctggctt
ctgtcagcagcactggtggcaatctacaatagtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870461_1870575
seq2: B6Ng01-134D11.b_232_348

seq1  GCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACATGCAAACTTT  50
      ||||||||||||||| ||| ||||||||||||||||||| ||||||||||
seq2  GCCTAGTCGGCCATCCCTGCAAAGAGAGGCCCATTGGACTTGCAAACTTT  50

seq1  ATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGCAGTGGGTGG  100
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGAAGTGGGTGG  100

seq1  GTAGGGGA--GTGGGGG  115
      ||||||||  |||||||
seq2  GTAGGGGATTGTGGGGG  117

seq1: chr4_52108756_52109826
seq2: B6Ng01-134D11.g_87_1152 (reverse)

seq1  ATACTATTGTAGATGCCAACAAGTGCTTGCTGACAGGAGCCAGA-TATAG  49
      ||||||||||||||  | || ||||| ||||||||| ||||||| |||||
seq2  ATACTATTGTAGATTGCCACCAGTGC-TGCTGACAGAAGCCAGATTATAG  49

seq1  CTATCTCCTGAGAGGTTCTGCCAGTGCCTGAAAAATACAGAGGGAGATGC  99
      ||||   |||||||| ||||||||||||||||||||||||||||||||||
seq2  CTATTCTCTGAGAGG-TCTGCCAGTGCCTGAAAAATACAGAGGGAGATGC  98

seq1  TCTCTGCCAACCATTGGACTGAGCACAAGGTCCCTAGTGGAGGAGCTAGA  149
      |||||||| |||||| |||||||||||||||||||||| || ||||||||
seq2  TCTCTGCC-ACCATT-GACTGAGCACAAGGTCCCTAGT-GAAGAGCTAGA  145

seq1  GAAAGGACTGAAGGACCTGAAGGAGCTTGCAGACCCATAGAAAGAACAAC  199
      |||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  GAAAGGACTGAAGGACCTGAAGGAGC-TGCAGACCCATAGAAAG-ACAAC  193

seq1  AATATGAACCAACCAGTACCCCCAG-AGCTCCCAGGGACTAAACACCAAC  248
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATATGAACCAACCAGTACCCCCAGAAGCTCCCAGGGACTAAACACCAAC  243

seq1  CAAGGAGTACACATGGAGGGGCCCATCACTCCAGCTGCATATGTAGCAGA  298
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGTACACATGGAGGGGCCCATCACTCCAGCTGCATATGTAGCAGA  293

seq1  GGATGGCCTTGTCAGTCGTTAATGAGAAGAGAGGCTCTTGGTCCTGTGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCCTTGTCAGTCGTTAATGAGAAGAGAGGCTCTTGGTCCTGTGAA  343

seq1  GGTTCTATGCCAGTGTAGGGGAATGCCAGGACAGGAAAGCAGGAGAGGGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTATGCCAGTGTAGGGGAATGCCAGGACAGGAAAGCAGGAGAGGGT  393

seq1  AGGTTGGTGAGCAGGGGAGAGGAAATGGGATGAGGGTTTTCAGAGGTGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGTGAGCAGGGGAGAGGAAATGGGATGAGGGTTTTCAGAGGTGAA  443

seq1  ACCTGGAAAGGAAATAACATTTGAAATGTAAATAAAGAAAATATCTAATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAAAGGAAATAACATTTGAAATGTAAATAAAGAAAATATCTAATT  493

seq1  TTTTTAAAAAGATGTTTAAAAATATCACTAAGAAATATGACACAGTGTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAAGATGTTTAAAAATATCACTAAGAAATATGACACAGTGTAT  543

seq1  CTTATCCTGGAAATAAATATCCTTCGTGGCAGAATTGGAATCAGAACGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCTGGAAATAAATATCCTTCGTGGCAGAATTGGAATCAGAACGTT  593

seq1  CCCACAGACTGTAAACAGTTCAAAGCTTTTGGCCTCACAATATAGATGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGACTGTAAACAGTTCAAAGCTTTTGGCCTCACAATATAGATGAT  643

seq1  TTTGAACCCAAATTGCTTTCTGAGGTTACAGGCCAAGAAATAATGATCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACCCAAATTGCTTTCTGAGGTTACAGGCCAAGAAATAATGATCCA  693

seq1  GAAATGAAGCCCCTGGGCTGTCATTCCCCTATCAGCCAACACCGAAAGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAGCCCCTGGGCTGTCATTCCCCTATCAGCCAACACCGAAAGCA  743

seq1  TACCTTTATATCATAATCATTAACTGACCTTCGAGGGACTTTTTTTCCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTATATCATAATCATTAACTGACCTTCGAGGGACTTTTTTTCCTC  793

seq1  ACATTAGATGGGTAATAACAATATCTCCAAATATCTCAAGAATGTCACTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGATGGGTAATAACAATATCTCCAAATATCTCAAGAATGTCACTG  843

seq1  GAGTTAGTTTCCGCTAGCTAGAGCAGCTGTGATTTTGTAGATGAGTATAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGTTTCCGCTAGCTAGAGCAGCTGTGATTTTGTAGATGAGTATAT  893

seq1  AGGAAACGTGAATCCTCTAAATTGGATGCAAGAAAAACAAAAATCTACAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACGTGAATCCTCTAAATTGGATGCAAGAAAAACAAAAATCTACAT  943

seq1  TCACCCTGCCCATGATTCTTGCAAAAATTAAAAAGAGAGACAAGGCACTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTGCCCATGATTCTTGCAAAAATTAAAAAGAGAGACAAGGCACTA  993

seq1  ACTTGCTGAATATGTAGACTCAACAAACTTCTAGTGTGTTTTAACAACTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTGAATATGTAGACTCAACAAACTTCTAGTGTGTTTTAACAACTT  1043

seq1  CAGGAGGTGGTTGATGAGCACCC  1071
      |||||||||||||||||||||||
seq2  CAGGAGGTGGTTGATGAGCACCC  1066