BAC Information

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BAC

Clone NameB6Ng01-138D13
ChromosomeY (Build37)11 (Build37)
Map Location 1,120,578 - 1,121,01673,473,720 - 73,474,881
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138D13.bB6Ng01-138D13.g
ACCDH937542DH937543
length9721,132
definitionDH937542|Mus musculus domesticus DNA, BAC clone: B6Ng01-138D13, 5' end.DH937543|Mus musculus domesticus DNA, BAC clone: B6Ng01-138D13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,578 - 1,121,016)(73,473,720 - 73,474,881)
sequence
gaattctgtttagctctgtgtcctattttttaattaggttatttggattg
ttggtgtttaacttcttgtgttttttaaaaatattttttattaggtattt
tcctcaattacattttcaatgctatccaaaaagtcccccataccctcccc
cccactcccctacccatccactcccactttttggccctggcgttcctctg
tactggggcatataaagtttgcatgtccaatgggcctctctttccagtga
tggctgattaggccatcttttgatacatatgcagctagagtcaagagctc
cggggtactggttagttcataatgttgttccacctatagggttgcagatc
cctttagctccttggattctttctcgagctcctccattggggaccctgtc
atccttccaatagctgactgtgagcatccacttatgtgtttgctaggccc
cggcatagtctcacaagagacagttatatcagggtcctttcagcaaaatc
ttcctagtgtatgcaatggtgtcagtgtttggaggctgattatgggatgg
atccaatagccagaagctggaaagaacccagatgcccctcaacagaggaa
tggatacaaaaagtgtggtacatttacacaatgaagtactactcagctat
taaaaagaatgaatctatgaaattcttaggcaaatggatggacctggagg
gcatcatcctgagtgaggtaacccaatcacaaaagaactcacacaatatg
tactcattgataagtggatattagcacagaaacttagaatacccaagata
taagatacaatttgctaaacgcatgaaactcaagaagaacgaagatcaaa
gtgtggacactttgccccttcttacatattatccctctgtcagatgcttg
atgaagatcttttcccaatctgtaggttgctgttttgtcctattgactgt
gtcctttgactacagaagcttt
gaattcttagaggatcatcattaagatttaagtcatctatttgtctatat
agcatcactacaagacaatacatcttcagggatcagagatctgctccaaa
ggggtgtgctactacttagtaattgttatatatgtttaataataacagga
aaagcatattaatagtgggactctttcctaaaatgaatcccttgcaatct
tgcttaataggggcacacctgttgcagagtatataataatcagaagcagg
ccatttcaggaagatcacctgctggttattagcttgtcccattatggctc
ttgacaacaaaagaagaaactccaggagatctaaacaactctctcaaaaa
tgctacaacctaatctgaccactttcaccttcacagactgaaagtttttc
aatatagctcaattcagagattacacactaagactttatgggttagcttt
atagaaggtaaaccatgtaagaataaaaaagcatgctccattaaaaagtt
gctcttcttatacatccctcactggcctcaaacatggatcactcattacc
tctgcattccaattactgccatgaaaaaatgtgccaccataaccatttcc
tgcttctcatgtaaatgaacagtactttcatgttatgtacaaatgtgtgc
catgatcaggatccagagaaatcaccatccatggttactactgatgagtc
aatgaacttccaacctttctacatgttaagactgtaggtctcaaattaaa
caatgcaaaaatcacaaggaatatgttttaacatttggtgcacttgcatt
tctgcttaggttctatagaagtacttagtttgactaactttcattatgga
atacataattataacaccaatgttattactatcattactgataacctgta
cttaggaacattagcatacatatcagtgactcagatattagtaagcttgt
cagataaattatcatcatttagtaggacactatttcagagtttgttcaga
ctcagagtgaaagtatagtaactatattagcaaaaagactgacttccttc
tcttgtatttttgtgttaaatattggaagtccacataccagttatataga
ccaccattgaaggggttatatgatgacatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120578_1121016
seq2: B6Ng01-138D13.b_115_544

seq1  TTTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACAT  50
      ||||||||   |       ||||||||||||||||||  |||| ||||||
seq2  TTTTTTAAAAAT-------ATTTTTTATTAGGTATTTTCCTCAATTACAT  43

seq1  TTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCT  100
      || ||||||||| | |||||||||||||| || ||  |||||||||||||
seq2  TTTCAATGCTATCCAAAAAGTCCCCCATACCCTCC--CCCCCACTCCCCT  91

seq1  GCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCAT  150
       |||| |||||||| ||||||||||||||  |||| ||||||||||||||
seq2  ACCCATCCACTCCCACTTTTTGGCCCTGGCGTTCCTCTGTACTGGGGCAT  141

seq1  ATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAG  200
      |||||||||||| |||||||||||||||||||||||||||||| || |||
seq2  ATAAAGTTTGCATGTCCAATGGGCCTCTCTTTCCAGTGATGGCTGATTAG  191

seq1  GCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGG  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGG  241

seq1  TTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCC  300
      |||| |||||| ||||||||||||||||||||| ||||||||||||||||
seq2  TTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCC  291

seq1  TTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATT  350
      |||| | ||||||| |||||||||||||||  |||| | |||| |||| |
seq2  TTGGATTCTTTCTCGAGCTCCTCCATTGGGGACCCTGTCATCCTTCCAAT  341

seq1  AGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCT  400
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  AGCTGACTGTGAGCATCCACTTATGTGTTTGCTAGGCCCCGGCATAGTCT  391

seq1  CACAAGAGACAGCTACATCTGCCTCCTTTCAATAAAATC  439
      |||||||||||| || ||| |  ||||||||  ||||||
seq2  CACAAGAGACAGTTATATCAGGGTCCTTTCAGCAAAATC  430

seq1: chr11_73473720_73474881
seq2: B6Ng01-138D13.g_67_1198 (reverse)

seq1  TTCATGGTCATCATATAACCCCTTTCATATTGTTGTGTTCTTTATTATTA  50
      ||||| ||||||||||||||||||  |     | ||| ||| ||    ||
seq2  TTCAT-GTCATCATATAACCCCTTCAA-----TGGTGGTCTATA----TA  40

seq1  CTTGTTATGT-GACTTTTCCCAATATTTTAACACAAGAATTTACCAAGAG  99
        || ||||| |||||   |||||| |||||||||| |||    ||||||
seq2  ACTGGTATGTGGACTT---CCAATA-TTTAACACAAAAAT---ACAAGAG  83

seq1  AAGGAGTTCAGTTCTTTTGTGCTTAATATTAGTTTACTATACTTTCACCT  149
      |||||  |||| |||||| ||| ||||| ||| |||||||||||||| ||
seq2  AAGGAAGTCAG-TCTTTT-TGC-TAATA-TAG-TTACTATACTTTCA-CT  127

seq1  CTGGAGTCTGAACAAACTCTGAAATAGTGTCCTACTTAAAATGATGATTA  199
      || |||||||||||||||||||||||||||||||||  ||||||||||  
seq2  CT-GAGTCTGAACAAACTCTGAAATAGTGTCCTACT--AAATGATGAT--  172

seq1  ATTTTATCTGGACAAGCTTACTAATATCTGAGTCACTGATATTGTATGCT  249
      | ||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  AATTTATCT-GACAAGCTTACTAATATCTGAGTCACTGATA-TGTATGCT  220

seq1  AATGTTCCTAAGTACAGGTTATCAGTAATGATAGTAATAACATTTGGTGT  299
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AATGTTCCTAAGTACAGGTTATCAGTAATGATAGTAATAACA-TTGGTGT  269

seq1  TATAATTATGTATTCCATAATGAAAGTTAGTCAAACTAAGTACTTCTATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTATGTATTCCATAATGAAAGTTAGTCAAACTAAGTACTTCTATA  319

seq1  GAACCTAAGCAGAAATGCAAGTGCACCAAATGTTAAAACATATTCCTTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTAAGCAGAAATGCAAGTGCACCAAATGTTAAAACATATTCCTTGT  369

seq1  GATTTTTGCATTGTTTAATTTGAGACCTACAGTCTTAACATGTAGAAAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTGCATTGTTTAATTTGAGACCTACAGTCTTAACATGTAGAAAGG  419

seq1  TTGGAAGTTCATTGACTCATCAGTAGTAACCATGGATGGTGATTTCTCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGTTCATTGACTCATCAGTAGTAACCATGGATGGTGATTTCTCTG  469

seq1  GATCCTGATCATGGCACACATTTGTACATAACATGAAAGTACTGTTCATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGATCATGGCACACATTTGTACATAACATGAAAGTACTGTTCATT  519

seq1  TACATGAGAAGCAGGAAATGGTTATGGTGGCACATTTTTTCATGGCAGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAGAAGCAGGAAATGGTTATGGTGGCACATTTTTTCATGGCAGTA  569

seq1  ATTGGAATGCAGAGGTAATGAGTGATCCATGTTTGAGGCCAGTGAGGGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAATGCAGAGGTAATGAGTGATCCATGTTTGAGGCCAGTGAGGGAT  619

seq1  GTATAAGAAGAGCAACTTTTTAATGGAGCATGCTTTTTTATTCTTACATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGAAGAGCAACTTTTTAATGGAGCATGCTTTTTTATTCTTACATG  669

seq1  GTTTACCTTCTATAAAGCTAACCCATAAAGTCTTAGTGTGTAATCTCTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCTTCTATAAAGCTAACCCATAAAGTCTTAGTGTGTAATCTCTGA  719

seq1  ATTGAGCTATATTGAAAAACTTTCAGTCTGTGAAGGTGAAAGTGGTCAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCTATATTGAAAAACTTTCAGTCTGTGAAGGTGAAAGTGGTCAGA  769

seq1  TTAGGTTGTAGCATTTTTGAGAGAGTTGTTTAGATCTCCTGGAGTTTCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTGTAGCATTTTTGAGAGAGTTGTTTAGATCTCCTGGAGTTTCTT  819

seq1  CTTTTGTTGTCAAGAGCCATAATGGGACAAGCTAATAACCAGCAGGTGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTGTCAAGAGCCATAATGGGACAAGCTAATAACCAGCAGGTGAT  869

seq1  CTTCCTGAAATGGCCTGCTTCTGATTATTATATACTCTGCAACAGGTGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGAAATGGCCTGCTTCTGATTATTATATACTCTGCAACAGGTGTG  919

seq1  CCCCTATTAAGCAAGATTGCAAGGGATTCATTTTAGGAAAGAGTCCCACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATTAAGCAAGATTGCAAGGGATTCATTTTAGGAAAGAGTCCCACT  969

seq1  ATTAATATGCTTTTCCTGTTATTATTAAACATATATAACAATTACTAAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATGCTTTTCCTGTTATTATTAAACATATATAACAATTACTAAGT  1019

seq1  AGTAGCACACCCCTTTGGAGCAGATCTCTGATCCCTGAAGATGTATTGTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCACACCCCTTTGGAGCAGATCTCTGATCCCTGAAGATGTATTGTC  1069

seq1  TTGTAGTGATGCTATATAGACAAATAGATGACTTAAATCTTAATGATGAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTGATGCTATATAGACAAATAGATGACTTAAATCTTAATGATGAT  1119

seq1  CCTCTAAGAATTC  1162
      |||||||||||||
seq2  CCTCTAAGAATTC  1132