BAC Information

Click to search

BAC

Clone NameB6Ng01-138H02
Chromosome2 (Build37)Y (Build37)
Map Location 68,618,325 - 68,619,449573,321 - 573,364
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC227995, B3galt1, Stk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik
Downstream geneLOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138H02.bB6Ng01-138H02.g
ACCDH937703DH937704
length1,122710
definitionDH937703|Mus musculus domesticus DNA, BAC clone: B6Ng01-138H02, 5' end.DH937704|Mus musculus domesticus DNA, BAC clone: B6Ng01-138H02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(68,618,325 - 68,619,449)(573,321 - 573,364)
sequence
gaattctctttgacactctgccacatactaaggttctggtgcactgagct
agagtccttagcctgaatcttcggcagtgataaacttcttgttcacttgc
tcgatcttctttacacagaggctgagcatccactttgatctttctgcctt
attgcctggaatccagcttgtcttgctgtgtctgctcatgggcacgagac
ttgagtttcatgtcctttctgctggaagcttccgtataaggcagacttaa
aaattgatttccaaatacattatgtcactggattttttcttcttgaaata
ttaatatctccatgttgttacatgtcattatgcatatactattgtttccc
cttcattaattcagtctttctttagcctctagtgacttcttgaaaggggt
tgttttgggtatagactattctttgctgggaagtaaagtctcttagtcct
tggtccctctttgtccaaccctgtgtttcaccacatactcacaggaactg
ctactttaggggtcattgggaacttaaggaggctccgagtctgttcaaca
gccccatccagagctgataaaagtgagctgctgcctttgctgagaagagc
attgattctagccctgaagactacgagagagcaagtgcagccatgcagac
caccctggtgccgggtcatattcaaccatgaggagacggagtaactgata
aacccacacctgtttcaaacccagaaccccaatactggaattcaccacca
cattttgctgctttagttttggcgaactcttcctcgggagatcggctccc
ttgccttcagttcttagctcatgactttctgtgcctcttctgggctttct
gttacagtggttcagcttcttgtcgggctatattcttcctaaactgcctg
tgcttcattttttatcctccttatagaaattgaaagcaaacaaacagcag
aatggacttgtctcacactctctagagggaacagaacctgagggatgaaa
ggatcctgttcaaggtctggctttgctccttacctggcctctcttagcag
ctttattttcttagccttatttcccttcattgcaacctgggtggttataa
caacagaactgacagcactcag
gaattcttaggcaaatggatggatctgggggatatcatcctgagtgaggt
aacccaatcacaaaagaacacatatgatatgcattcactgataatttaga
attagcccagaaacttagaatactcaagatacaatttgcaaaacacatga
aattcaagaagaaggaagatcaatgtgtggatacttcattccttcttaga
atgcagaacaaaatacccatggaaggagttacagagacaaagttcaaagc
tgagactgaagggccattcagagactgccccaccaggggatccatccaat
aaataaccaccaaacccagacactattgcatatgccagtaagattttgct
gacaggaccctgatatagctgtcacttgtgaggctatgccagtgcctagc
aaatacagaagtggatgttcacagtcatctattggatggaacatagggcc
cccaaatagaggagctagagaaagtacccaaggagctgaaggggtctgcc
actctataggaggaacaacaatatgaactaaccagtacccccagagctca
catgtctagttgcatatatagtagaagatggcctagtcagtcatcaatgg
gaggcaaggccctcagtcttgagaagattatatgccccagtacaggggaa
ttccagggccaggaagcaggagtgggtgggttgtggatcagggcggggtg
agggtatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_68618325_68619449
seq2: B6Ng01-138H02.b_46_1167 (reverse)

seq1  CTGA-TGCTGTCAGTTCTGTTGTTTATACCAACTCCAGTTTTGCAAATGA  49
      |||| ||||||||||||||||| ||||| | || ||||  |||| |||||
seq2  CTGAGTGCTGTCAGTTCTGTTG-TTATAACCAC-CCAG-GTTGC-AATGA  46

seq1  AGGG-AATAAAGCCTAGAAAATAAAGCCTGCTAAGAGA-GCCAGGTAA-G  96
      |||| ||||| ||  ||||||||||| ||||||||||| ||||||||| |
seq2  AGGGAAATAAGGCTAAGAAAATAAAG-CTGCTAAGAGAGGCCAGGTAAGG  95

seq1  AGCAAAGCCAGACCTTGAACAGGATCCTTCTCATCCCTCAGGTTCTGTTC  146
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCAAAGCCAGACCTTGAACAGGATCCTT-TCATCCCTCAGGTTCTGTTC  144

seq1  CACTCTAGAGAGTGTGAGACAAGTCCATTCTGCTGTTTGTTTGCTTTCAA  196
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-CTCTAGAGAGTGTGAGACAAGTCCATTCTGCTGTTTGTTTGCTTTCAA  193

seq1  TTTCTATAAGGAGGATAAAAAATGAAGCACAGGCAGTTTAGGAAGAATAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATAAGGAGGATAAAAAATGAAGCACAGGCAGTTTAGGAAGAATAT  243

seq1  AGCCCGACAAGAAGCTGAACCACTGTAACAGAAAGCCCAGAAGAGGCACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGACAAGAAGCTGAACCACTGTAACAGAAAGCCCAGAAGAGGCACA  293

seq1  GAAAGTCATGAGCTAAGAACTGAAGGCAAGGGAGCCGATCTCCCGAGGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCATGAGCTAAGAACTGAAGGCAAGGGAGCCGATCTCCCGAGGAA  343

seq1  GAGTTCGCCAAAACTAAAGCAGCAAAATGTGGTGGTGAATTCCAGTATTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGCCAAAACTAAAGCAGCAAAATGTGGTGGTGAATTCCAGTATTG  393

seq1  GGGTTCTGGGTTTGAAACAGGTGTGGGTTTATCAGTTACTCCGTCTCCTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGGGTTTGAAACAGGTGTGGGTTTATCAGTTACTCCGTCTCCTC  443

seq1  ATGGTTGAATATGACCCGGCACCAGGGTGGTCTGCATGGCTGCACTTGCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGAATATGACCCGGCACCAGGGTGGTCTGCATGGCTGCACTTGCT  493

seq1  CTCTCGTAGTCTTCAGGGCTAGAATCAATGCTCTTCTCAGCAAAGGCAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGTAGTCTTCAGGGCTAGAATCAATGCTCTTCTCAGCAAAGGCAGC  543

seq1  AGCTCACTTTTATCAGCTCTGGATGGGGCTGTTGAACAGACTCGGAGCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACTTTTATCAGCTCTGGATGGGGCTGTTGAACAGACTCGGAGCCT  593

seq1  CCTTAAGTTCCCAATGACCCCTAAAGTAGCAGTTCCTGTGAGTATGTGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGTTCCCAATGACCCCTAAAGTAGCAGTTCCTGTGAGTATGTGGT  643

seq1  GAAACACAGGGTTGGACAAAGAGGGACCAAGGACTAAGAGACTTTACTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACAGGGTTGGACAAAGAGGGACCAAGGACTAAGAGACTTTACTTC  693

seq1  CCAGCAAAGAATAGTCTATACCCAAAACAACCCCTTTCAAGAAGTCACTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAAGAATAGTCTATACCCAAAACAACCCCTTTCAAGAAGTCACTA  743

seq1  GAGGCTAAAGAAAGACTGAATTAATGAAGGGGAAACAATAGTATATGCAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTAAAGAAAGACTGAATTAATGAAGGGGAAACAATAGTATATGCAT  793

seq1  AATGACATGTAACAACATGGAGATATTAATATTTCAAGAAGAAAAAATCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATGTAACAACATGGAGATATTAATATTTCAAGAAGAAAAAATCC  843

seq1  AGTGACATAATGTATTTGGAAATCAATTTTTAAGTCTGCCTTATACGGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACATAATGTATTTGGAAATCAATTTTTAAGTCTGCCTTATACGGAA  893

seq1  GCTTCCAGCAGAAAGGACATGAAACTCAAGTCTCGTGCCCATGAGCAGAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAGCAGAAAGGACATGAAACTCAAGTCTCGTGCCCATGAGCAGAC  943

seq1  ACAGCAAGACAAGCTGGATTCCAGGCAATAAGGCAGAAAGATCAAAGTGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGACAAGCTGGATTCCAGGCAATAAGGCAGAAAGATCAAAGTGG  993

seq1  ATGCTCAGCCTCTGTGTAAAGAAGATCGAGCAAGTGAACAAGAAGTTTAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCAGCCTCTGTGTAAAGAAGATCGAGCAAGTGAACAAGAAGTTTAT  1043

seq1  CACTGCCGAAGATTCAGGCTAAGGACTCTAGCTCAGTGCACCAGAACCTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCGAAGATTCAGGCTAAGGACTCTAGCTCAGTGCACCAGAACCTT  1093

seq1  AGTATGTGGCAGAGTGTCAAAGAGAATTC  1125
      |||||||||||||||||||||||||||||
seq2  AGTATGTGGCAGAGTGTCAAAGAGAATTC  1122

seq1: chrY_573321_573364
seq2: B6Ng01-138H02.g_519_562

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGC  44
      || ||||||||||||||||||||||||||||| ||||| |||||
seq2  ATAGAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTGC  44