BAC Information

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BAC

Clone NameB6Ng01-138K17
Chromosome2 (Build37)Y (Build37)
Map Location 46,566,002 - 46,567,0241,870,346 - 1,870,570
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041337, LOC666604, LOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138K17.bB6Ng01-138K17.g
ACCDH937865DH937866
length1,012349
definitionDH937865|Mus musculus domesticus DNA, BAC clone: B6Ng01-138K17, 5' end.DH937866|Mus musculus domesticus DNA, BAC clone: B6Ng01-138K17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(46,566,002 - 46,567,024)(1,870,346 - 1,870,570)
sequence
gaattctttaaaataatgaatgggatactgaagtgtacctctcactgttg
atggtttctggctagagtaggggtgaggtaggattcagatttctttaagg
ggctgaccactgggagtttgacactgctccagtgagtatatgggcaacac
aaattgaacgaggtatactatttttttttatcttttttcttttctttttg
tttttcttcttgggggtggattataaggatagggcgtggacttgggggca
ctgggaagtaaatgtgatcatggtgcattatgtaaaattcccaaagaatc
aataaaaataccatgctgagaaaaactataaaattaaaaagaagtgatgg
tgagatggttggcctggtttctgaagacagttttatatgatcacaggtac
agatgggcttcaacaatgctcaggagctgacaaaagaaagagttattttc
tctatataaatctgaataaataaatggtaatttgacttgctatctcttct
acttttcaaatgtaatgaataggactgatgataattactaagtttcatat
tataagcacaaagttgcttacatgattttaataaaaacctgagatattat
ctctctttttctgtggatatttttaggataagacttgtttatttgctgat
tatgactgttgattcttatagaagatctgaaaaaagtggagaaatttgtt
gaaataaatgactgagagaacagaatacagcacagaatatcaaagaaaaa
ttcatagccttttatgatttaaatataacttgcagctttgtcatttcttt
aattaagtttttaagaaagtcattcactaaatgtgtttcttacaaatcag
ctaatttggctggcctgcaaatgtctataagaacaacttgtgacagtaca
ctttaggtgatctgccattgctcttctcatatgagatccagaggtgccaa
ctggagaaatatgtctgttgctctgttggacttctagtactaaggctaat
ggcagtactgag
atcagagtttaaaagttatgagttggtgaaagaaatacatgagcattcat
tattgtgtttactacttttaagagtatgctcatagtcagctattggatgg
atcacaggtctcccaatggaggagctagagaaagtacccaaggagctaaa
gggatctgcaaccctataggtggaacaacaatatgaactaaccagtaccc
cagagctcttgactctagctgcatatgtatcagaagatggcctagtcggc
catcagtggaaagagaggcccattggtcatgcaaactttatatgccccag
tacaggggaacgatagtgccaagaagtgggagtgggtgggtaggggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_46566002_46567024
seq2: B6Ng01-138K17.b_46_1057

seq1  GAATTCTTTAAAATAATGAATGGGATACTGAAGTGTACCTCTCACTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAATAATGAATGGGATACTGAAGTGTACCTCTCACTGTTG  50

seq1  ATGGTTTCTGGCTAGAGTAGGGGTGAGGTAGGATTCAGATTTCTTTAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCTGGCTAGAGTAGGGGTGAGGTAGGATTCAGATTTCTTTAAGG  100

seq1  GGCTGACCACTGGGAGTTTGACACTGCTCCAGTGAGTATATGGGCAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACCACTGGGAGTTTGACACTGCTCCAGTGAGTATATGGGCAACAC  150

seq1  AAATTGAACGAGGTATACTATTTTTTTTTATCTTTTTTCTTTTCTTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAACGAGGTATACTATTTTTTTTTATCTTTTTTCTTTTCTTTTTG  200

seq1  TTTTTCTTCTTGGGGGTGGATTATAAGGATAGGGCGTGGACTTGGGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCTTGGGGGTGGATTATAAGGATAGGGCGTGGACTTGGGGGCA  250

seq1  CTGGGAAGTAAATGTGATCATGGTGCATTATGTAAAATTCCCAAAGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGTAAATGTGATCATGGTGCATTATGTAAAATTCCCAAAGAATC  300

seq1  AATAAAAATACCATGCTGAGAAAAACTATAAAATTAAAAAGAAGTGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATACCATGCTGAGAAAAACTATAAAATTAAAAAGAAGTGATGG  350

seq1  TGAGATGGTTGGCCTGGTTTCTGAAGACAGTTTTATATGATCACAGGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGGTTGGCCTGGTTTCTGAAGACAGTTTTATATGATCACAGGTAC  400

seq1  AGATGGGCTTCAACAATGCTCAGGAGCTGACAAAAGAAAGAGTTATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGCTTCAACAATGCTCAGGAGCTGACAAAAGAAAGAGTTATTTTC  450

seq1  TCTATATAAATCTGAATAAATAAATGGTAATTTGACTTGCTATCTCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATAAATCTGAATAAATAAATGGTAATTTGACTTGCTATCTCTTCT  500

seq1  ACTTTTCAAATGTAATGAATAGGACTGATGATAATTACTAAGTTTCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCAAATGTAATGAATAGGACTGATGATAATTACTAAGTTTCATAT  550

seq1  TATAAGCACAAAGTTGCTTACATGATTTTAATAAAAACCTGAGATATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCACAAAGTTGCTTACATGATTTTAATAAAAACCTGAGATATTAT  600

seq1  CTCTCTTTTTCTGTGGATATTTTTAGGATAAGACTTGTTTATTTGCTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTTTCTGTGGATATTTTTAGGATAAGACTTGTTTATTTGCTGAT  650

seq1  TATGACTGTTGATTCTTATAGAAGATCTGAAAAAAGTGGAGAAATTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTGTTGATTCTTATAGAAGATCTGAAAAAAGTGGAGAAATTTGTT  700

seq1  GAAATAAATGACTGAGAGAACAGAATACAGCACAGAATATCAAAGAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAATGACTGAGAGAACAGAATACAGCACAGAATATCAAAGAAAAA  750

seq1  TTCATAGCCTTTTATGATTTAAATATAACTTGCAGCTTTGTCATTTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGCCTTTTATGATTTAAATATAACTTGCAGCTTTGTCATTTCTTT  800

seq1  AATTAAGTTTTTAAGAAAGTCATTCACTAAATGTGTTCCTTACAAATTCA  850
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  AATTAAGTTTTTAAGAAAGTCATTCACTAAATGTGTTTCTTACAAA-TCA  849

seq1  GCTAATTTGGCTGGCCTGCAAATGTCTATAAGAAACAACTTGTGACAGGT  900
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  GCTAATTTGGCTGGCCTGCAAATGTCTATAAG-AACAACTTGTGACA-GT  897

seq1  ACACTTTAGGTGATCTGCCATTGCTCTTCTCCATATGAGATCCAGAGGTG  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACACTTTAGGTGATCTGCCATTGCTCTTCT-CATATGAGATCCAGAGGTG  946

seq1  CACAACTGGAGAAATTATGTCTGTTGCTCATGTTTGGACCTACTAGTAGC  1000
      | |||||||||||| |||||||||||||| || ||||| || |||||| |
seq2  C-CAACTGGAGAAA-TATGTCTGTTGCTC-TG-TTGGA-CTTCTAGTA-C  990

seq1  TAGAGCCTAATGGCAGTACTGAG  1023
      || || |||||||||||||||||
seq2  TA-AGGCTAATGGCAGTACTGAG  1012

seq1: chrY_1870346_1870570
seq2: B6Ng01-138K17.g_198_422

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||| ||||||||||||| |||||| |||||||||||||| |||||||
seq2  ACAACAATATGAACTAACCAGTACCCCAGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | |||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  ATGTATCAGAAGATGGCCTAGTCGGCCATCAGTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      || |||||||||||||||||||||||||||||||||||  || ||||| |
seq2  GGTCATGCAAACTTTATATGCCCCAGTACAGGGGAACGATAGTGCCAAGA  200

seq1  AGGGGCAGTGGGTGGGTAGGGGAGT  225
      || || |||||||||||||||||||
seq2  AGTGGGAGTGGGTGGGTAGGGGAGT  225