BAC Information

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BAC

Clone NameB6Ng01-138M22
ChromosomeY (Build37)3 (Build37)
Map Location 248,334 - 248,44787,616,568 - 87,617,059
singlet/doubletsingletsinglet
Overlap geneJarid1d
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3
Downstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138M22.bB6Ng01-138M22.g
ACCDH937960DH937961
length946486
definitionDH937960|Mus musculus domesticus DNA, BAC clone: B6Ng01-138M22, 5' end.DH937961|Mus musculus domesticus DNA, BAC clone: B6Ng01-138M22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(248,334 - 248,447)(87,616,568 - 87,617,059)
sequence
gaattctcacattctgacttgtagagtgagttttggaaaggctatctatg
gttgaaaaagctaaatggaagcctttagaattgtctgtaccagggaaaat
agtgaatccaaagcagtattgcattccttgagaaactgcagaaaatggtg
caaccatcaaggacttgaaagatgcaggggttgtggcttccatcacatct
cccactaactctcctatctgattagtgcagaagacagatggatcatggag
aatgacagctgactatcaaaaactcaagtagtggctcctatgctgttcca
atgtagtgtccttaattgagaagattaacgcatctcctggaccatggtct
agtatgttgtatgcagatattgatataacaaatagctttctctttataac
cctggctgtcctggaactcactctgtagactagactggcctcgaactcag
aaatccacctgcctctgcctcccaagtgccgggattaaaggcgtgcacca
ccacgcctggctaagcatgtgtttgtacatacatttgtggtttttgttcc
tcgatttctttatcatatgatgtaacatcaatgaagagagtatcagtgtt
tataatatttaagtttgagatactaaaagagataatgccatctattctaa
aatttgcaatgcgtttgtgtatggagtatagttatatcatgttaggtata
attatggtttaaatatataatgcatttgtaattaattgtatgtaggatag
tttttatcatgttagatgtaattatgacctagttattgtttcattagaaa
ttaagcctgacttaaggagataagattgtgtgtcaagttgacaaggagtg
aactttgtgatggctatttcttggttgtcgacttgactacacctggaaat
taactaaaacccaagtgggctggtacatctatgaaaggaccttcct
aacgcgttcccgagcgctggccagctcattaactgtcttcagggctacag
gcgtggactcctctccagcctcaagtcctcgggccagtccctcatagacc
atcccaaaagagccttggcccagctcccggatgatggctatctgctcccg
aggcacctcccactcgtcggggacatacactgagaagggtgtgtgtctga
gaaggggtgtgtgtagggaggcaggggtgcatctctccacaggccttcat
ctgcctctggactttttttcctctttcttaaagccactatccaactttaa
tgtgaaaaatggactatttttctaaagatcctacatcctttaagattttg
gtaactacaggctcacacaaaggcaggacaaaggcgtctatgccagtttt
atgctgacttccttggtacagaaagcagtgaactgttagtttcaaattag
ggcagtacttctgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_248334_248447
seq2: B6Ng01-138M22.b_431_544

seq1  TTTCTCTGTGTAACCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCT  50
      ||||||| | |||||||||||||||||||||||||| ||||||| || ||
seq2  TTTCTCTTTATAACCCTGGCTGTCCTGGAACTCACTCTGTAGACTAGACT  50

seq1  GGCCTCGAACTCAGAAATCCACCTGCCTCTGCTTCCCAAGTGCTGGGATT  100
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  GGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCCGGGATT  100

seq1  AAAGGAGTGCGCCA  114
      ||||| |||| |||
seq2  AAAGGCGTGCACCA  114

seq1: chr3_87616568_87617059
seq2: B6Ng01-138M22.g_68_559 (reverse)

seq1  ACACACACACACACACACACACACAGAAGTACTGCCCTAATTTGAAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACAGAAGTACTGCCCTAATTTGAAACTA  50

seq1  ACAGTTCACTGCTTTCTGTACCAAGGAAGTCAGCATAAAACTGGCATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCACTGCTTTCTGTACCAAGGAAGTCAGCATAAAACTGGCATAGA  100

seq1  CGCCTTTGTCCTGCCTTTGTGTGAGCCTGTAGTTACCAAAATCTTAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTTGTCCTGCCTTTGTGTGAGCCTGTAGTTACCAAAATCTTAAAGG  150

seq1  ATGTAGGATCTTTAGAAAAATAGTCCATTTTTCACATTAAAGTTGGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGATCTTTAGAAAAATAGTCCATTTTTCACATTAAAGTTGGATAG  200

seq1  TGGCTTTAAGAAAGAGGAAAAAAAGTCCAGAGGCAGATGAAGGCCTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTAAGAAAGAGGAAAAAAAGTCCAGAGGCAGATGAAGGCCTGTGG  250

seq1  AGAGATGCACCCCTGCCTCCCTACACACACCCCTTCTCAGACACACACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCACCCCTGCCTCCCTACACACACCCCTTCTCAGACACACACCC  300

seq1  TTCTCAGTGTATGTCCCCGACGAGTGGGAGGTGCCTCGGGAGCAGATAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTGTATGTCCCCGACGAGTGGGAGGTGCCTCGGGAGCAGATAGC  350

seq1  CATCATCCGGGAGCTGGGCCAAGGCTCTTTTGGGATGGTCTATGAGGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCCGGGAGCTGGGCCAAGGCTCTTTTGGGATGGTCTATGAGGGAC  400

seq1  TGGCCCGAGGACTTGAGGCTGGAGAGGAGTCCACGCCTGTAGCCCTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCGAGGACTTGAGGCTGGAGAGGAGTCCACGCCTGTAGCCCTGAAG  450

seq1  ACAGTTAATGAGCTGGCCAGCGCTCGGGAACGCGTTGAATTC  492
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAATGAGCTGGCCAGCGCTCGGGAACGCGTTGAATTC  492