BAC Information

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BAC

Clone NameB6Ng01-139C01
ChromosomeY (Build37)X (Build37)
Map Location 573,321 - 573,628109,117,481 - 109,118,608
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139C01.bB6Ng01-139C01.g
ACCDH938194DH938195
length7761,111
definitionDH938194|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C01, 5' end.DH938195|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,628)(109,117,481 - 109,118,608)
sequence
gaattcccatatacaaccaccaaacccagacactattgcatattccagaa
agactttgctgacaggaccctaatatagctgtcttgagtgaggctattcc
agtgtctggcaaatacagaagtggatactcatagtcatctattggatgga
acacaggacccccaatggagaagctagagaaagtacccaaggagctgaag
gggtctgcaaccctataggaggaacaacaatatgaaccagaacccccccc
ccagagcttgtggggaagatagcctagtcggccatcactgggaagagagg
ccccttggtcttgcaaactttatatgccccagtacaggggaacgccaggg
agtgggtaggtaggggagcagggcagagggagggtataggggactttcag
gatagcatttaaaatgtaaatgaagaaaatatctaataaaaaaattgaaa
aaaagaattcacagaacaatgaagcttaacaagaaggaaggccaaagtgt
agatgcttcaatcccacttagaatagggaacaaaataatcacaggaggca
gagggagggaaagaccttggtgggagacgggaggggaaaagaggagaaaa
actgagaggcaggatcaatatgggtagacacaggagagaagtacagagaa
tgaatattaatatgtagcagtggggtgcagcgaactgagaaacacttaga
aagttccagacaccagggataggagaggcacccaatcgagatgaccaaaa
tgcccaacatcagggagagagaatgt
gaattccttaggattcataatacaaccttgtaaactaacatcagggttca
aattctctttatgtttttgttttaaaaaatgcacattggggtctggagag
atggctcagcaactaagaacactgactactcttccaaaggtcctgagttc
aaattccagcaaccacatgatggctcacagccacccgtaatgagttctga
tgccctcttctggtgtgtctgaagacagatatggtgtacttacatataat
aaataaatgtatctttacaaaaaaagaaagaaatgcacattgaaaatgca
ttttctctttatgttttttggatacttctaatagctctgttttaatgata
cctatacctaaaaatcaacaaggaaaaaaaagtaatatacttagttaaag
ttctaacattccttagatcacagcatatgcttttcccttccaccctacta
atatatattgtgagagttagacattaggtaacagagacagactacttgaa
ggtttcagattctttatgtgattagggttttgacttccaacttttattta
tacacttttagcatttgatcattataacttttctcatattcaattctatc
tgagtgtatttttgagtatttgagtataatcttcataaatagaaatagct
ttcaaaatattatttctattatttccaacttagaccatatcttttaccta
tcctttatcttctatttctttgtcttagatttgccaattaatcccttaga
cagttttgcttctgctgttatgttttatatgcatccataattgtatgtat
ttgtatacattttaagaatcatatgtaagatataatctgatatttgtcat
tttgacttttgatacccaatcaagtcctccagtagaatctattttctata
gcaacaaaatattggatgctcatggttaaacagtcttttatttatgactc
agtttataccatacttagttatgagtagagctacataacatttatatgca
catatctctgtgatatgtgattactgaggtacttacaactttcctggatc
acatgctggatgattggtagttatatattattttctgagtatctgggact
gatttcacaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573628
seq2: B6Ng01-139C01.b_201_479

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||| ||||||||||||||||||||||||| ||||| ||||||| |||
seq2  ATGGAGAAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGAATAACCAGTA-----TCCACAGAGCTCAT  95
      ||||  ||||||||||||||   |||||| |      || |||||||  |
seq2  ATAGGAGGAACAACAATATG---AACCAGAACCCCCCCCCCAGAGCTTGT  97

seq1  GTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGG  145
      |                     |||||| ||||||| |||||||| ||||
seq2  G-------------------GGGAAGATAGCCTAGTCGGCCATCACTGGG  128

seq1  AAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAA  178

seq1  CACCAGGGCCAAGAAGTGGGAGAAGGTGGGTAGGGTAGCAAGGCAGGGGG  245
      | ||||||      ||||      ||| ||||||| |||| ||||| |||
seq2  CGCCAGGG------AGTG------GGTAGGTAGGGGAGCAGGGCAGAGGG  216

seq1  AGGATATAGGGGACTTTTGGGATAGCATTTGAAATGTAAATGAAGAAAAT  295
      ||| |||||||||||||  ||||||||||| |||||||||||||||||||
seq2  AGGGTATAGGGGACTTTCAGGATAGCATTTAAAATGTAAATGAAGAAAAT  266

seq1  AACTAATAAAAAA  308
      | |||||||||||
seq2  ATCTAATAAAAAA  279

seq1: chrX_109117481_109118608
seq2: B6Ng01-139C01.g_68_1178

seq1  GAATTCCTTAGGATTCATAATACAACCTTGTAAACTAACATCAGGGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGGATTCATAATACAACCTTGTAAACTAACATCAGGGTTCA  50

seq1  AATTCTCTTTATGTTTTTGTTTTAAAAAATGCACATTGGGGTCTGGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTTTATGTTTTTGTTTTAAAAAATGCACATTGGGGTCTGGAGAG  100

seq1  ATGGCTCAGCAACTAAGAACACTGACTACTCTTCCAAAGGTCCTGAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGCAACTAAGAACACTGACTACTCTTCCAAAGGTCCTGAGTTC  150

seq1  AAATTCCAGCAACCACATGATGGCTCACAGCCACCCGTAATGAGTTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCAGCAACCACATGATGGCTCACAGCCACCCGTAATGAGTTCTGA  200

seq1  TGCCCTCTTCTGGTGTGTCTGAAGACAGATATGGTGTACTTACATATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTTCTGGTGTGTCTGAAGACAGATATGGTGTACTTACATATAAT  250

seq1  AAATAAATGTATCTTTACAAAAAAAGAAAGAAATGCACATTGAAAATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGTATCTTTACAAAAAAAGAAAGAAATGCACATTGAAAATGCA  300

seq1  TTTTCTCTTTATGTTTTTTGGATACTTCTAATAGCTCTGTTTTAATGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTTATGTTTTTTGGATACTTCTAATAGCTCTGTTTTAATGATA  350

seq1  CCTATACCTAAAAATCAACAAGGAAAAAAAAGTAATATACTTAGTTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATACCTAAAAATCAACAAGGAAAAAAAAGTAATATACTTAGTTAAAG  400

seq1  TTCTAACATTCCTTAGATCACAGCATATGCTTTTCCCTTCCACCCTACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACATTCCTTAGATCACAGCATATGCTTTTCCCTTCCACCCTACTA  450

seq1  ATATATATTGTGAGAGTTAGACATTAGGTAACAGAGACAGACTACTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTGTGAGAGTTAGACATTAGGTAACAGAGACAGACTACTTGAA  500

seq1  GGTTTCAGATTCTTTATGTGATTAGGGTTTTGACTTCCAACTTTTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAGATTCTTTATGTGATTAGGGTTTTGACTTCCAACTTTTATTTA  550

seq1  TACACTTTTAGCATTTGATCATTATAACTTTTCTCATATTCAATTCTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTTTAGCATTTGATCATTATAACTTTTCTCATATTCAATTCTATC  600

seq1  TGAGTGTATTTTTGAGTATTTGAGTATAATCTTCATAAATAGAAATAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTATTTTTGAGTATTTGAGTATAATCTTCATAAATAGAAATAGCT  650

seq1  TTCAAAATATTATTTCTATTATTTCCAACTTAGACCATATCTTTTACCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATATTATTTCTATTATTTCCAACTTAGACCATATCTTTTACCTA  700

seq1  TCCTTTATCTTCTATTTCTTTGTCTTAGATTTGCCAATTAATCCCTTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTATCTTCTATTTCTTTGTCTTAGATTTGCCAATTAATCCCTTAGA  750

seq1  CAGTTTTGCTTCTGCTGTTATGTTTTATATGCATCCATAATTGTATGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGCTTCTGCTGTTATGTTTTATATGCATCCATAATTGTATGTAT  800

seq1  TTGTATACATTTTAAGAATCATATGTAAGATATAATCTGATATTTGTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATACATTTTAAGAATCATATGTAAGATATAATCTGATATTTGTCAT  850

seq1  TTTGACTTTTGATACCCAAATCAAAGTCCTCCAGTAGAATCTATTTTCTT  900
      ||||||||||||||||| |||| ||||||||||||||||||||||||| |
seq2  TTTGACTTTTGATACCC-AATC-AAGTCCTCCAGTAGAATCTATTTTC-T  897

seq1  ATAAGCAACAAAATATTGGATGCTCATGGTTAAACAGTCTTTTATTTATG  950
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-AGCAACAAAATATTGGATGCTCATGGTTAAACAGTCTTTTATTTATG  946

seq1  AACTCAGTTTATACCATAACTTAGTTATGAGTAGAGCTACAATAAACATT  1000
       |||||||||||||||| |||||||||||||||||||||||   ||||||
seq2  -ACTCAGTTTATACCAT-ACTTAGTTATGAGTAGAGCTACA--TAACATT  992

seq1  TATATGCACATATCTCTGTGATATGTGGATTTACTGAGTTACTTACAAAC  1050
      |||||||||||||||||||||||||||   |||||||| |||||||||  
seq2  TATATGCACATATCTCTGTGATATGTG--ATTACTGAGGTACTTACAACT  1040

seq1  TTCCTGGATTCACATGCTGGATGATATGGTAGTTATATATTTAATTTTCT  1100
      |||||||| |||||||||||||||| |||||||||||||||  |||||||
seq2  TTCCTGGA-TCACATGCTGGATGAT-TGGTAGTTATATATT--ATTTTCT  1086

seq1  GAGGAATCTTGGTACTGATTTTCACAAT  1128
      || | ||| ||| ||||| |||||||||
seq2  GA-GTATC-TGGGACTGA-TTTCACAAT  1111