BAC Information

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BAC

Clone NameB6Ng01-139C20
ChromosomeY (Build37)11 (Build37)
Map Location 1,120,598 - 1,120,80396,458,419 - 96,458,704
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139C20.bB6Ng01-139C20.g
ACCDH938230DH938231
length1,005286
definitionDH938230|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C20, 5' end.DH938231|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,598 - 1,120,803)(96,458,419 - 96,458,704)
sequence
gaattcactctgcagaccaggctggcctccaactcagagatcagcctgcc
tctgcctcccaagtgttggaatcaaagcacttgactgatataagtatatt
tggtttataaaaaagatttaattttaagttatgtgttggtgtgtgcatgt
gggtgtgtgtgtgtgagtgtaggctggcatccatggtgggcagaggcatc
tgaacttggagctggtgttaacaggcatccatgaggacctgacttgggtg
ctgggaatcaaatttggaccccccataaattcagtactatgcactttttt
taattaggtattttccttgtttacatttccaatgctatcccaaaagtccc
ccatacccacccccccaattccctacccacccactccccctttttggccc
tggcgttcccctgtactggggcatataaagtttgcaagtccaaagggcct
ctctttccagtgatggttgacaaggccatcttttgatacatatgcagcta
gagacaagagctccggggtactggttagttcatattgttgttccacctat
aggattgcagttccctttagctccttgggtactttctctagctcctccat
tgggggctgtgtgacccatccattagctgactgtgagcatccacttctgt
gtttgttaggccccggcatagtctcacaagagacagctatatctgggtcc
tttcagcaaaatcttgctagtatatgcaatggtgtcagcgtttggaagct
gattatgggatggatctctggatatggcaatcactagatggtccatcctt
tcgtcacagctccaaattttgtctctgtaactccttccatgggtattttg
tcccattttctaggaaggggcaaagtgtccatactttggtctcgttcttc
ttgagttcatgcgtttagcaatgtatcttatatcttgtgtatcctaagtt
tctgggctatatcacttatcatgagtacatattgttcgagtcctttgtga
ttggg
aattcccagccatctgtaatgggatctgattccctcttttgggtgtctgt
gaaaacacacccaaaaacaaaacaaaacaaaaaacaaaacactcatacac
acacaaaataacatttttaacatatttattggtttttggggggtggggtg
ggtgtacatgtgctcgtgacacatactgatgctgcagtgtgtattcagag
gatgagggcagcatgtaggacttctgccatgtgggttcccagggtggaac
tcaggacatcggacttggtgggatgcaccactaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120598_1120803
seq2: B6Ng01-139C20.b_340_543

seq1  TTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAG  50
      ||||| |||||||||||  ||  ||||||||||||||||||| |||||||
seq2  TTTTTAATTAGGTATTTTCCTTGTTTACATTTCCAATGCTATCCCAAAAG  50

seq1  TCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTT  100
      ||||||||| |||||  |||||| | |||| |||||||||||||||||||
seq2  TCCCCCATACCCACC--CCCCCAATTCCCTACCCACCCACTCCCCCTTTT  98

seq1  TGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAAT  150
      |||||||||  |||||||||||||||||||||||||||||||||||||| 
seq2  TGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAAA  148

seq1  GGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATG  200
      ||||||||||||||||||||||  ||| |||||||||||||||| |||||
seq2  GGGCCTCTCTTTCCAGTGATGGTTGACAAGGCCATCTTTTGATACATATG  198

seq1  CAGCTA  206
      ||||||
seq2  CAGCTA  204

seq1: chr11_96458419_96458704
seq2: B6Ng01-139C20.g_69_354

seq1  AATTCCCAGCCATCTGTAATGGGATCTGATTCCCTCTTTTGGGTGTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCAGCCATCTGTAATGGGATCTGATTCCCTCTTTTGGGTGTCTGT  50

seq1  GAAAACACACCCAAAAACAAAACAAAACAAAAAACAAAACACTCATACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACACACCCAAAAACAAAACAAAACAAAAAACAAAACACTCATACAC  100

seq1  ACACAAAATAACATTTTTAACATATTTATTGGTTTTTGGGGGGTGGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAATAACATTTTTAACATATTTATTGGTTTTTGGGGGGTGGGGTG  150

seq1  GGTGTACATGTGCTCGTGACACATACTGATGCTGCAGTGTGTAGTCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGTGTACATGTGCTCGTGACACATACTGATGCTGCAGTGTGTATTCAGAG  200

seq1  GATGAGGGCAGCATGTAGGACTTCTGCCATGTGGGTTCCCAGGGTGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGGCAGCATGTAGGACTTCTGCCATGTGGGTTCCCAGGGTGGAAC  250

seq1  TCAGGCCATCGGACTTGGTGGGATGCACCACTAGGC  286
      ||||| ||||||||||||||||||||||||||||||
seq2  TCAGGACATCGGACTTGGTGGGATGCACCACTAGGC  286