BAC Information

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BAC

Clone NameB6Ng01-139D18
Chromosome4 (Build37)Y (Build37)
Map Location 81,908,475 - 81,909,6391,870,346 - 1,870,560
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMpdz, LOC100040131, LOC100040144, EG668895, LOC100040164, EG545641
Downstream geneNfib, Zdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139D18.bB6Ng01-139D18.g
ACCDH938272DH938273
length1,138437
definitionDH938272|Mus musculus domesticus DNA, BAC clone: B6Ng01-139D18, 5' end.DH938273|Mus musculus domesticus DNA, BAC clone: B6Ng01-139D18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,908,475 - 81,909,639)(1,870,346 - 1,870,560)
sequence
gaattcatattgggattttaagaatagatctgatggcatgaaagagggac
catccttaagggctgccatgtgtttgctgtttctggtactaacatcttga
atgtgatcttagtctagctatctatttatgccaacatccagatagccttt
taaatgtggactttatgaagccaataaaggagatatttagaaaatgacag
aaactgtatcctgcaatgttccttagctataatttattgaacaaataaag
aaccacacaatgagtaagatgttcagcagatccgagtaatgatttccagg
gcttcctgtcagctggatgaccaactttcgtttctctatgaagctcgagc
tctgtgttacctgtgctgcaatgtgtactcatgcgtggttcttactagcc
gaattcagttttgtttatgcagttcctcaaagcttacactatatgtatag
agtctttgttttatacagaagatgaccgcatttggagaaagcacaatgac
actgggagtgaagagagggtgataaataatatttccttatacagctctgc
agcttccaaagacaacatgactaattcaaaccaagtcaaggtgaagggag
aagagcaactaagtggcatgtaagtctccaggtaatgaatcaccatgggg
agcccttcagtttgctcatcttttgctattgtgaccttagaaacgtgtgt
ccatatggagacaaagaccaaaacttgatagaatgtgaagtcagcacaac
gtgataagtagtcctaagaacattcccagatctactgtatgctctctaca
aataagaaatacatgcttaaccactctggaaatcagtctggtggttcctc
agaaaattggacatagtactaacggaagtcccagcaattcctctcctggc
atatacccagaaattgtttctacttgtataggacacatgctccactatgt
ttatagcagccttattatatagcagagctggaaagacccagatgtccctt
acagagatgatacagaaaatgtgtacatttacacatgagtactactcagc
ataaacatgattcatgaaatcttaggcatagaatgcaatgaagaaatcat
cctgtgtgagtaactcaatccaaaataacacacttaat
aaagttcttaaaagaatggaccatctagagactgccatatccatggatcc
atcccataatcagcctccaaacgctgacaccattgcatacactagcaaga
ttttgctgaaaggaccctgatatagctgtctcttgtgagactaggccagg
gcctagcaaacacagaagtggatgctcacagtcagctattggatggaaca
taggacccccaatggtggagctagataaagtacccaaggagctaaacgga
tctgcaaccctataagtggaacaacaatatgaacaaaccagtaccccctg
gagctcttgtctctagctgcatatgtatcaaaagatggcctagtcagcca
ccagtggaaagagaggccccttggtcatgcaaactttatatgcctcagtg
caggggaacgccagggccaaaaagtggtagtgggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_81908475_81909639
seq2: B6Ng01-139D18.b_43_1180 (reverse)

seq1  ATTATGTGTGTTATTTTGTGATTGAGTTACCTCACACAGGATGATATCCT  50
      |||| ||||||||||||| |||||||||| ||||||||||||||| | ||
seq2  ATTAAGTGTGTTATTTTG-GATTGAGTTA-CTCACACAGGATGAT-TTCT  47

seq1  CCATATGCATCTATTTGCCTAAGAATTTCATGAATTCATTGTTTTTAATT  100
       ||| ||||| | | |||||||| |||||||||| ||| |||||     |
seq2  TCAT-TGCAT-TCTATGCCTAAG-ATTTCATGAA-TCA-TGTTT----AT  88

seq1  GCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTATCCATTC  150
      ||||||||||||||   |||||||||||| |||||||||||||| |||  
seq2  GCTGAGTAGTACTC--ATGTGTAAATGTA-CACATTTTCTGTAT-CAT--  132

seq1  CTCTGTTAAGGGACATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATA  200
      ||||| ||||||||||||||| |||||||||| ||| |||| ||| ||||
seq2  CTCTG-TAAGGGACATCTGGG-TCTTTCCAGC-TCT-GCTA-TAT-AATA  176

seq1  AGGCTGCTATAAACATAGTGGAGCATGTGTCCTTATTACAAGTAGAAACA  250
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  AGGCTGCTATAAACATAGTGGAGCATGTGTCCT--ATACAAGTAGAAACA  224

seq1  ATTTCTGGGTATATGCCCAGGAGAGGAATTGCTGGGACTTCCGTTAGTAC  300
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGGTATATG-CCAGGAGAGGAATTGCTGGGACTTCCGTTAGTAC  273

seq1  TATGTCCAATTTTCTGAGGAACCACCAGACTGATTTCCAGAGTGGTTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCAATTTTCTGAGGAACCACCAGACTGATTTCCAGAGTGGTTAAG  323

seq1  CATGTATTTCTTATTTGTAGAGAGCATACAGTAGATCTGGGAATGTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATTTCTTATTTGTAGAGAGCATACAGTAGATCTGGGAATGTTCTT  373

seq1  AGGACTACTTATCACGTTGTGCTGACTTCACATTCTATCAAGTTTTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTACTTATCACGTTGTGCTGACTTCACATTCTATCAAGTTTTGGTC  423

seq1  TTTGTCTCCATATGGACACACGTTTCTAAGGTCACAATAGCAAAAGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCCATATGGACACACGTTTCTAAGGTCACAATAGCAAAAGATGA  473

seq1  GCAAACTGAAGGGCTCCCCATGGTGATTCATTACCTGGAGACTTACATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTGAAGGGCTCCCCATGGTGATTCATTACCTGGAGACTTACATGC  523

seq1  CACTTAGTTGCTCTTCTCCCTTCACCTTGACTTGGTTTGAATTAGTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGTTGCTCTTCTCCCTTCACCTTGACTTGGTTTGAATTAGTCATG  573

seq1  TTGTCTTTGGAAGCTGCAGAGCTGTATAAGGAAATATTATTTATCACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTGGAAGCTGCAGAGCTGTATAAGGAAATATTATTTATCACCCT  623

seq1  CTCTTCACTCCCAGTGTCATTGTGCTTTCTCCAAATGCGGTCATCTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCACTCCCAGTGTCATTGTGCTTTCTCCAAATGCGGTCATCTTCTG  673

seq1  TATAAAACAAAGACTCTATACATATAGTGTAAGCTTTGAGGAACTGCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAACAAAGACTCTATACATATAGTGTAAGCTTTGAGGAACTGCATA  723

seq1  AACAAAACTGAATTCGGCTAGTAAGAACCACGCATGAGTACACATTGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACTGAATTCGGCTAGTAAGAACCACGCATGAGTACACATTGCAG  773

seq1  CACAGGTAACACAGAGCTCGAGCTTCATAGAGAAACGAAAGTTGGTCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTAACACAGAGCTCGAGCTTCATAGAGAAACGAAAGTTGGTCATC  823

seq1  CAGCTGACAGGAAGCCCTGGAAATCATTACTCGGATCTGCTGAACATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGACAGGAAGCCCTGGAAATCATTACTCGGATCTGCTGAACATCTT  873

seq1  ACTCATTGTGTGGTTCTTTATTTGTTCAATAAATTATAGCTAAGGAACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTGTGTGGTTCTTTATTTGTTCAATAAATTATAGCTAAGGAACAT  923

seq1  TGCAGGATACAGTTTCTGTCATTTTCTAAATATCTCCTTTATTGGCTTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGATACAGTTTCTGTCATTTTCTAAATATCTCCTTTATTGGCTTCA  973

seq1  TAAAGTCCACATTTAAAAGGCTATCTGGATGTTGGCATAAATAGATAGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCCACATTTAAAAGGCTATCTGGATGTTGGCATAAATAGATAGCT  1023

seq1  AGACTAAGATCACATTCAAGATGTTAGTACCAGAAACAGCAAACACATGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAGATCACATTCAAGATGTTAGTACCAGAAACAGCAAACACATGG  1073

seq1  CAGCCCTTAAGGATGGTCCCTCTTTCATGCCATCAGATCTATTCTTAAAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTTAAGGATGGTCCCTCTTTCATGCCATCAGATCTATTCTTAAAA  1123

seq1  TCCCAATATGAATTC  1165
      |||||||||||||||
seq2  TCCCAATATGAATTC  1138

seq1: chrY_1870346_1870560
seq2: B6Ng01-139D18.g_291_507

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||| |||||||||||||||||||| ||||||||||||||||| |||||
seq2  CTAGATAAAGTACCCAAGGAGCTAAACGGATCTGCAACCCTATAAGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCC--TGAGCTCTTGACTCTTGCTGC  98
      |||||| ||||||| ||||| ||||||   ||||||||| |||| |||||
seq2  ACAACAATATGAACAAACCAGTACCCCCTGGAGCTCTTGTCTCTAGCTGC  100

seq1  ATAGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCA  148
      ||| ||||||||||||||||||||| |||| || ||||||||||||||| 
seq2  ATATGTATCAAAAGATGGCCTAGTCAGCCACCAGTGGAAAGAGAGGCCCC  150

seq1  TTGGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAA  198
      |||| ||||||||||||||||||| |||| ||||||||||||||||||||
seq2  TTGGTCATGCAAACTTTATATGCCTCAGTGCAGGGGAACGCCAGGGCCAA  200

seq1  AAAGGGGCAGTGGGTGG  215
      |||| || |||||||||
seq2  AAAGTGGTAGTGGGTGG  217