BAC Information

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BAC

Clone NameB6Ng01-139E19
ChromosomeY (Build37)15 (Build37)
Map Location 1,120,598 - 1,120,7645,288,447 - 5,289,040
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139E19.bB6Ng01-139E19.g
ACCDH938320DH938321
length1,006594
definitionDH938320|Mus musculus domesticus DNA, BAC clone: B6Ng01-139E19, 5' end.DH938321|Mus musculus domesticus DNA, BAC clone: B6Ng01-139E19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,598 - 1,120,764)(5,288,447 - 5,289,040)
sequence
gaattcagtaatttgactaactgcattaaatgtacataaattaaataaat
caaagacagtctggcttgaaaaccaggcctgttctatgtacaggagacac
agtatgttcaaagatgcaaaaggttgaaagtgaaagaaaggctaaattat
acaaacagcaaaaccaagaaagctggaatagttctaccaaatcatttata
ctgggcttaaaattaaacaaaacttacagagataagaatgagcatcaaaa
tgataagatagttgctctatcagaaaattagaacactcaggaacatgtat
gctttgaacaaagcacaaaagcaaagttttacattttttttattaggtat
tttcctcgtttacattttcaatgctattccaaaagtccccaatacccacc
cccacaatctcctacccacccactccccctttttggccctggcgttcccc
tgtactggggcatataaagtttgcaagtccagtgggcctctctttgcagt
gatagccgactaggccatcttttgatacatatgcagctagagacaagagc
tccggggtactggttagttcatattgttgttccatttatagggttgcaga
tccctttagctccttgggtactttctctagatcctccattgagggccctg
tgatccatccaatagctgactgtgatcatccacttctgtgtttgctaggc
cccggcatagtcacacaagagacagctatatctgggtcctttcagcaaaa
tcttgctagtgtatgcaatggtgtcagtgtttggaagctgattatgggat
ggatccccagtatggcagtctctagatggtccatcatttcgtcacagctc
ctaattttgtctctgtaactccttccatgggtgttttgttcccatttcta
agacggggcaaagtgtcccctttatatgttcttcttgagtttcatgtgtt
tagcaaattgtatctatttcttgggtatcctaagtttctgggctaatatc
cactta
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatccgatttggtataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacagtgtcttttgctttgcaattttatgaggtcccat
ttatcgattcttgatcttacagcacaagccattgctgttctattcaggaa
tttttcccctgtacccatatcttcgaggcttttccctactttctcctctg
taagtttcagtgtctctggttttatgtggagttccttaatccacttagat
ttgaccttagtacaaggagatagaaatggatcaattcgcattcttctata
tgataatcagatgcacacattataattcaactaccttaagcaaaggaaaa
gtattttaaaactttaattaactaattaattaacagtgtgtctagtgtat
atgtgtgtatgtagtatatgtgtgtctgtgtacatatgtatgtgcacatg
tgtgtgcatgatgtgtgtggtatgtgtgtttgtctgtgattgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120598_1120764
seq2: B6Ng01-139E19.b_383_547

seq1  TTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAG  50
      |||||||||||||||||  ||| ||||||||| ||||||||| |||||||
seq2  TTTTTTATTAGGTATTTTCCTCGTTTACATTTTCAATGCTATTCCAAAAG  50

seq1  TCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTT  100
      ||||| ||| |||||  ||| || || ||| |||||||||||||||||||
seq2  TCCCCAATACCCACC--CCCACAATCTCCTACCCACCCACTCCCCCTTTT  98

seq1  TGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAAT  150
      |||||||||  ||||||||||||||||||||||||||||||||||||| |
seq2  TGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAGT  148

seq1  GGGCCTCTCTTTCCAGT  167
      |||||||||||| ||||
seq2  GGGCCTCTCTTTGCAGT  165

seq1: chr15_5288447_5289040
seq2: B6Ng01-139E19.g_66_659

seq1  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC  100

seq1  CTATCCGATTTGGTATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCGATTTGGTATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150

seq1  TTTTGTCTTATTGACAGTGTCTTTTGCTTTGCAATTTTATGAGGTCCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACAGTGTCTTTTGCTTTGCAATTTTATGAGGTCCCAT  200

seq1  TTATCGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAA  250

seq1  TTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTG  300

seq1  TAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGAT  350

seq1  TTGACCTTAGTACAAGGAGATAGAAATGGATCAATTCGCATTCTTCTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTTAGTACAAGGAGATAGAAATGGATCAATTCGCATTCTTCTATA  400

seq1  TGATAATCAGATGCACACATTATAATTCAACTACCTTAAGCAAAGGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATCAGATGCACACATTATAATTCAACTACCTTAAGCAAAGGAAAA  450

seq1  GTATTTTAAAACTTTAATTAACTAATTAATTAACAGTGTGTCTAGTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTAAAACTTTAATTAACTAATTAATTAACAGTGTGTCTAGTGTAT  500

seq1  ATGTGTGTATGTAGTATATGTGTGTCTGTGTACATATGTATGTGCACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTATGTAGTATATGTGTGTCTGTGTACATATGTATGTGCACATG  550

seq1  TGTGTGCATGATGTGTGTGGTATGTGTGTTTGTCTGTGATTGTA  594
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCATGATGTGTGTGGTATGTGTGTTTGTCTGTGATTGTA  594