BAC Information

Click to search

BAC

Clone NameB6Ng01-145G17
ChromosomeY (Build37)12 (Build37)
Map Location 1,120,599 - 1,120,98376,152,029 - 76,152,965
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145G17.bB6Ng01-145G17.g
ACCDH942825DH942826
length952932
definitionDH942825|Mus musculus domesticus DNA, BAC clone: B6Ng01-145G17, 5' end.DH942826|Mus musculus domesticus DNA, BAC clone: B6Ng01-145G17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,599 - 1,120,983)(76,152,029 - 76,152,965)
sequence
gaattctttttccttctgttgcgttagttgtaatgttttatcttttgtga
gtggggcaatttatttatttgcttatttatttattcattggttgatttta
cttattatagctagctaaggatttgtcaattgcattgatctttccaaaca
aaccccttttggtttaattgattttctttagttctctgtctttgttctaa
tctttattatttccttctctctgttagctttggatttaatttgtgtgtat
tctacagtccctttagttataaagttatgttgttaagctttttaccttgt
ttttttaaaaaaaatttttattaggtattttcctcatttacatttccaat
gctatcccaaaagtcccccatacccaccccccccactcccctacccaccc
actccccctttttggccctggcattcccctgtgatccatccaatacctga
ctgtgagcatccacttctgtgtttgctaggccctggcatagtctcacaag
agacagctatatctgggtcctttcagcaaaatcttgctagtgtatgcaat
ggtgtcaacatttggaagctgccatggatccctgcatatggcaatcacta
gatggtccatcctttcgtcacagctccaaattttgtctctgtaactcctt
ccatgggtgttttgttcccaattctaagaaggggcaaagtgtccacactt
tggtcttcatcgttcttgagtttcatgggtttagcaaattgtatcttata
tcttgggtatcctaagtttctgggctaatatccacttatcagtgagtaca
tatttgtgtgagttcctttgtgattgggttacctcactcaggatgatgcc
ctccaggtccatctagttgcctaggaatttcataaattcattctttttaa
tagctgagtagtacttcattgtgtaaatgtactacattttctgtatccat
tc
gaattcattgcaaagtaaactgttcagctagtggccaggaaacagagaga
aaaaaaaacatgtcatttacatttgagaaagagaaaacatgctcattttc
acagctactctgacctattctacagagtctccaagaaatgaaagaagatc
atgtgagaagaaaacagtgtaggatggagaggagcagaagcatttgagaa
tattgtcacttaacaggagccaaagtggaatcagcaaaatactagcacta
ggttcagtaaggcgacaggacataaatcaacacactggaattagaaattc
tcctattagcaatgagctagaaaggtgatcttaaaatgcatacaagaaaa
tgaccacaaaatacctcaaaacaaatcaaacaagaatttttcaagatcat
catagcaacaactacaaatcaaataatatctttgttgtgtttgatgctgt
agaatatctgcaggattcattcaagatccagactgccagctctgctttca
cttatatggtgataatatctgttacttatatctacatcttcatctacatc
tactgcatctataggttagatagatagatagatagatagatagatagata
gatagatagatagatagaaagaaaagtaaccctctgtgctcaagtactac
attgtaaaagataagactaatgttctatgtctttgtaactgtggaaacta
aggcacatccttaatactgaaataattacagtttagtggggtgaattttc
tttcaagttgtacagattggcaagtcgttccagtaaaggctaaattcctg
ctaagaatataaattagcaccaaagcaaatgaaacctctgcggtttttct
tctctttaacaactgcattatgtttataatgtctgcaaaatggcttttca
gtcactatttagttaaaaaaattgtaagagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120599_1120983
seq2: B6Ng01-145G17.b_360_545

seq1  TTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGT  50
      ||||||||||||||||  ||||||||||||||||||||||| ||||||||
seq2  TTTTTATTAGGTATTTTCCTCATTTACATTTCCAATGCTATCCCAAAAGT  50

seq1  CCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTT  100
      |||||||| |||||| ||||||||||||| ||||||||||||||||||||
seq2  CCCCCATACCCACCC-CCCCCACTCCCCTACCCACCCACTCCCCCTTTTT  99

seq1  GGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATG  150
      |||||||| |||||||||                                
seq2  GGCCCTGGCATTCCCCTG--------------------------------  117

seq1  GGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGC  200
                                                        
seq2  --------------------------------------------------  117

seq1  AGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCATAACGTTGTTCCA  250
                                                        
seq2  --------------------------------------------------  117

seq1  CCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCC  300
                                                        
seq2  --------------------------------------------------  117

seq1  TCCATTGGGAGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACT  350
                      ||||||||||| || |||||||||||||||||||
seq2  ----------------TGATCCATCCAATACCTGACTGTGAGCATCCACT  151

seq1  TCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAG  385
      |||||||||||| ||||| ||||||||||||||||
seq2  TCTGTGTTTGCTAGGCCCTGGCATAGTCTCACAAG  186

seq1: chr12_76152029_76152965
seq2: B6Ng01-145G17.g_66_997

seq1  GAATTCATTGCAAAGTAAACTGTTCAGCTAGTGGCCAGGAAACAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCAAAGTAAACTGTTCAGCTAGTGGCCAGGAAACAGAGAGA  50

seq1  AAAAAAAACATGTCATTTACATTTGAGAAAGAGAAAACATGCTCATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACATGTCATTTACATTTGAGAAAGAGAAAACATGCTCATTTTC  100

seq1  ACAGCTACTCTGACCTATTCTACAGAGTCTCCAAGAAATGAAAGAAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTACTCTGACCTATTCTACAGAGTCTCCAAGAAATGAAAGAAGATC  150

seq1  ATGTGAGAAGAAAACAGTGTAGGATGGAGAGGAGCAGAAGCATTTGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGAAGAAAACAGTGTAGGATGGAGAGGAGCAGAAGCATTTGAGAA  200

seq1  TATTGTCACTTAACAGGAGCCAAAGTGGAATCAGCAAAATACTAGCACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCACTTAACAGGAGCCAAAGTGGAATCAGCAAAATACTAGCACTA  250

seq1  GGTTCAGTAAGGCGACAGGACATAAATCAACACACTGGAATTAGAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGTAAGGCGACAGGACATAAATCAACACACTGGAATTAGAAATTC  300

seq1  TCCTATTAGCAATGAGCTAGAAAGGTGATCTTAAAATGCATACAAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTAGCAATGAGCTAGAAAGGTGATCTTAAAATGCATACAAGAAAA  350

seq1  TGACCACAAAATACCTCAAAACAAATCAAACAAGAATTTTTCAAGATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACAAAATACCTCAAAACAAATCAAACAAGAATTTTTCAAGATCAT  400

seq1  CATAGCAACAACTACAAATCAAATAATATCTTTGTTGTGTTTGATGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAACAACTACAAATCAAATAATATCTTTGTTGTGTTTGATGCTGT  450

seq1  AGAATATCTGCAGGATTCATTCAAGATCCAGACTGCCAGCTCTGCTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATCTGCAGGATTCATTCAAGATCCAGACTGCCAGCTCTGCTTTCA  500

seq1  CTTATATGGTGATAATATCTGTTACTTATATCTACATCTTCATCTACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATGGTGATAATATCTGTTACTTATATCTACATCTTCATCTACATC  550

seq1  TACTGCATCTATAGGTTAGATAGATAGATAGATAGATAGATAGATAGATA  600
      ||||||||||||||||    ||||||||||||||||||||||||||||||
seq2  TACTGCATCTATAGGT----TAGATAGATAGATAGATAGATAGATAGATA  596

seq1  GATAGATAGATAGATAGATAGAAAGAAAAGTAACCCTCTGTGCTCAAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGATAGAAAGAAAAGTAACCCTCTGTGCTCAAGTA  646

seq1  CTACATTGTAAAAGATAAGACTAATGTTCTATGTCTTTGTAACTGTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTGTAAAAGATAAGACTAATGTTCTATGTCTTTGTAACTGTGGAA  696

seq1  ACTAAGGCACATCCTTAATACTGAAATAATTACAG-TTAGTGGGGTGAAT  749
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTAAGGCACATCCTTAATACTGAAATAATTACAGTTTAGTGGGGTGAAT  746

seq1  TTTCTTTCAAGTTGTACAGATTGGCAAGTCGTTCCAGTAAAGGCTAAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCAAGTTGTACAGATTGGCAAGTCGTTCCAGTAAAGGCTAAATT  796

seq1  CCTGCTAAGAATATAAATTAGCACCAAAAGCAAAATGAAACCTCTGCGG-  848
      ||||||||||||||||||||||||| ||||| ||||||||||||||||| 
seq2  CCTGCTAAGAATATAAATTAGCACC-AAAGC-AAATGAAACCTCTGCGGT  844

seq1  TTTTCTTC-CCTTAACAACTGCATTATGTTTTATAATGTCTGC-AAATGG  896
      |||||||| | ||||||||||||||||| |||||||||||||| ||||||
seq2  TTTTCTTCTCTTTAACAACTGCATTATG-TTTATAATGTCTGCAAAATGG  893

seq1  CTTTTAAGTCACTATTTAGTTAAAAAAAATTGTAAGGAGTA  937
      ||||| ||||||||||||||| ||||||||||||| |||||
seq2  CTTTTCAGTCACTATTTAGTT-AAAAAAATTGTAA-GAGTA  932