BAC Information

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BAC

Clone NameB6Ng01-147B19
Chromosome11 (Build37)Y (Build37)
Map Location 80,529,818 - 80,530,9281,870,346 - 1,870,497
singlet/doubletsingletsinglet
Overlap geneMyo1d
Upstream geneLOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1
Downstream geneTmem98, Spaca3, Accn1, 1700071K01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147B19.bB6Ng01-147B19.g
ACCDH944082DH944083
length1,107490
definitionDH944082|Mus musculus domesticus DNA, BAC clone: B6Ng01-147B19, 5' end.DH944083|Mus musculus domesticus DNA, BAC clone: B6Ng01-147B19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,529,818 - 80,530,928)(1,870,346 - 1,870,497)
sequence
gaattccagttctcttgcttgtgattctattgagtgaagacaaggggaaa
ttccttttcagtgttctcaaaggtacatattagctattaaaaagaattaa
tatttaccaagtgcctacaaaatgtcaaatacaagattgggtagtagctt
catgtgtattatgtcattaaatcctcaaagtaagtaacctctgccataac
tgcgacatcctctcatcatgaacagtttcatttagcaaatggaacaaatg
tgaagtcattcaaacccatcatctactcctgcagtacatccttattagtc
caactttcaaaacacattgagcagtcaacagctactcctgtaaacggtta
ttagcactggggatttcccaatacttggaaagatattcaagcactgactc
tcctttagtgtatcttccagtatcaccctcccagtagataagtctgtaca
ggcctgggttctcacagatcctattactcatttgtgtaacaaatatttat
agtgttaggcaatgtgccagatgttagatgtaatagtgatcaatacactc
atagctgtcaccatccagacagcctaggagagggaagagactagcaaaaa
gaaaacaaagagaaagaagtgtgggaatagagaaaacacaaggtgatgtc
gggccacaaagggatggtcttttatccagatatcaaagctctgaaaaggc
aattccagagataacatctaagctgagaagaaaggatggatgggagttac
caaaggggtggggtaggagcggtaggaggaacagagctcaacacagatca
cagcagggcagaggcaggaggatttgagaaggtgtttaaaggatagacaa
aggttcagtaaggctggaacacagtatgaagaaaacacagcagaggaagg
gaaagggaaggtagcacaggacaaggtaggagagcagaagggcggacaaa
agtcttccaagtccattgacagtataggtctagtgtttgggtgactgggc
agcagcgtagaggatcagagttcaagtcatcctcagctatacaacacatc
taagtctagctagtggaggtgcaggtggggctggggacaacaacagcttt
ggggaga
tttgtttagctctgagccccattttttaatggggttatttgattttctgg
agtccacctcttgagttctttatatattggatattagtcccctatctgat
ttaggataggtaaagatccattcccaacctgttggtggcctttttgtctt
attgacggtgtcttttgccttacagaagctttacaattttatgaggtccc
atttgttgattctcgatcttacagcacaagccattgctgttctattcagg
aatttttcccctgtgcccatatcttcgaggcttttcgatgctcacagtca
gctattggatagatcacagggcccctaatggaggagctagagaaagtacc
caaggagctggggggatctgcaaccctataggtggaacaacaacatgaac
taaccagtacccccaagagctcgtgtctctagctgcatatgtgtcagaag
atggcctagtcggccatcagtggaaagagaggcccattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_80529818_80530928
seq2: B6Ng01-147B19.b_48_1154

seq1  GAATTCCAGTTCTCTTGCTTGTGATTCTATTGAGTGAAGACAAGGGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTCTCTTGCTTGTGATTCTATTGAGTGAAGACAAGGGGAAA  50

seq1  TTCCTTTTCAGTGTTCTCAAAGGTACATATTAGCTATTAAAAAGAATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTCAGTGTTCTCAAAGGTACATATTAGCTATTAAAAAGAATTAA  100

seq1  TATTTACCAAGTGCCTACAAAATGTCAAATACAAGATTGGGTAGTAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACCAAGTGCCTACAAAATGTCAAATACAAGATTGGGTAGTAGCTT  150

seq1  CATGTGTATTATGTCATTAAATCCTCAAAGTAAGTAACCTCTGCCATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTATTATGTCATTAAATCCTCAAAGTAAGTAACCTCTGCCATAAC  200

seq1  TGCGACATCCTCTCATCATGAACAGTTTCATTTAGCAAATGGAACAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGACATCCTCTCATCATGAACAGTTTCATTTAGCAAATGGAACAAATG  250

seq1  TGAAGTCATTCAAACCCATCATCTACTCCTGCAGTACATCCTTATTAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCATTCAAACCCATCATCTACTCCTGCAGTACATCCTTATTAGTC  300

seq1  CAACTTTCAAAACACATTGAGCAGTCAACAGCTACTCCTGTAAACGGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTCAAAACACATTGAGCAGTCAACAGCTACTCCTGTAAACGGTTA  350

seq1  TTAGCACTGGGGATTTCCCAATACTTGGAAAGATATTCAAGCACTGACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACTGGGGATTTCCCAATACTTGGAAAGATATTCAAGCACTGACTC  400

seq1  TCCTTTAGTGTATCTTCCAGTATCACCCTCCCAGTAGATAAGTCTGTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAGTGTATCTTCCAGTATCACCCTCCCAGTAGATAAGTCTGTACA  450

seq1  GGCCTGGGTTCTCACAGATCCTATTACTCATTTGTGTAACAAATATTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGGTTCTCACAGATCCTATTACTCATTTGTGTAACAAATATTTAT  500

seq1  AGTGTTAGGCAATGTGCCAGATGTTAGATGTAATAGTGATCAATACACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAGGCAATGTGCCAGATGTTAGATGTAATAGTGATCAATACACTC  550

seq1  ATAGCTGTCACCATCCAGACAGCCTAGGAGAGGGAAGAGACTAGCAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTCACCATCCAGACAGCCTAGGAGAGGGAAGAGACTAGCAAAAA  600

seq1  GAAAACAAAGAGAAAGAAGTGTGGGAATAGAGAAAACACAAGGTGATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAAGAGAAAGAAGTGTGGGAATAGAGAAAACACAAGGTGATGTC  650

seq1  GGGCCACAAAGGGATGGTCTTTTATCCAGATATCAAAGCTCTGAAAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACAAAGGGATGGTCTTTTATCCAGATATCAAAGCTCTGAAAAGGC  700

seq1  AATTCCAGAGATAACATCTAAGCTGAGAAGAAAGGATGGATGGGAGTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGAGATAACATCTAAGCTGAGAAGAAAGGATGGATGGGAGTTAC  750

seq1  CAAAGGGGTGGGGTAGGAGCGGTAGGAGGAACAGAGCTCAACACAGATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGGTGGGGTAGGAGCGGTAGGAGGAACAGAGCTCAACACAGATCA  800

seq1  CAGCAGGGCAGAGGCAGGAGGATTTGAGAAGGTGTTTAAAGGATAGACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGGCAGAGGCAGGAGGATTTGAGAAGGTGTTTAAAGGATAGACAA  850

seq1  AGGTTCAGTAAGGCTGGAACACAGTATGAAGAAAACACAGCAGAGGAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAGTAAGGCTGGAACACAGTATGAAGAAAACACAGCAGAGGAAGG  900

seq1  G-AAGGGAAGGTAGCACAGGACAAGGTAGGAGAGCAGAAGGGCGGACACA  949
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAAAGGGAAGGTAGCACAGGACAAGGTAGGAGAGCAGAAGGGCGGACAAA  950

seq1  GGTCTTCCAAGTTCCATTGACAGTATAGGTCTAGTGTTTGGTGGACTGGG  999
       |||||||||| |||||||||||||||||||||||||||||  |||| ||
seq2  AGTCTTCCAAG-TCCATTGACAGTATAGGTCTAGTGTTTGGGTGACT-GG  998

seq1  GCAGCAGCGGTAGGAGGATCAGGAGTTCAAGGTCATCCTCAGCTATACAA  1049
      |||||||| ||| |||||||| |||||||| |||||||||||||||||||
seq2  GCAGCAGC-GTA-GAGGATCA-GAGTTCAA-GTCATCCTCAGCTATACAA  1044

seq1  CACATCTAAGTCTAGCTAGT-GAGGTGCAGGGTGGGGCTGGTGACAAC-A  1097
      |||||||||||||||||||| |||||||| ||||||||||| |||||| |
seq2  CACATCTAAGTCTAGCTAGTGGAGGTGCA-GGTGGGGCTGGGGACAACAA  1093

seq1  CAGCTTTGGGGTGA  1111
      ||||||||||| ||
seq2  CAGCTTTGGGGAGA  1107

seq1: chrY_1870346_1870497
seq2: B6Ng01-147B19.g_411_564

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTGGGGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCC--TGAGCTCTTGACTCTTGCTGC  98
      ||||||  |||||||||||| ||||||   |||||| || |||| |||||
seq2  ACAACAACATGAACTAACCAGTACCCCCAAGAGCTCGTGTCTCTAGCTGC  100

seq1  ATAGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCA  148
      ||| || ||| |||||||||||||||||||||| ||||||||||||||||
seq2  ATATGTGTCAGAAGATGGCCTAGTCGGCCATCAGTGGAAAGAGAGGCCCA  150

seq1  TTGG  152
      ||||
seq2  TTGG  154