BAC Information

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BAC

Clone NameB6Ng01-148L09
ChromosomeY (Build37)4 (Build37)
Map Location 1,870,346 - 1,870,531102,823,419 - 102,824,522
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148L09.bB6Ng01-148L09.g
ACCDH945243DH945244
length4881,093
definitionDH945243|Mus musculus domesticus DNA, BAC clone: B6Ng01-148L09, 5' end.DH945244|Mus musculus domesticus DNA, BAC clone: B6Ng01-148L09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,531)(102,823,419 - 102,824,522)
sequence
ctttcattaaaattatatcacgacagaagagaacagatgttcagtcaggc
agccttacttccagtaggagccacgcctggctcttgtgtaacaagcttga
agttctgggttttggtttggttttggttttggtttggtttggtttgtttt
tcctatttaaaaccaattgggcactagcaagattttattgaaaggacgca
gatgtagctgtctcttgtgagactatgccggggcccagcaaacacagaag
tggatgctcacagtcagctaatggatggatcatagggctcccaatggagg
agctagagaaagtagccaaggagctaaagggatctgcaaccctataggtg
gaacaacattatgagctaaccagtaccccggagctcttgactctagctgc
atatatatcaaaagatggcctagtcggccatcactggaaagagaggccca
ttggacttgcaaactttatatgccccagtacaggggaa
gaattcatttataagtcatagtcaacttctcagattgtgtattcagtgca
gttatttatgactttctgttatctgtcataaggtttgtttacattttaaa
aataataatgtttttattcattctttgagaatttcatacagtgtgttttt
atattcttttcctgtaactcctcccatatcctgtccaaccatctccatgt
tactttcctctttgaagtacacatacatgcagacacacacatcgcagtgc
gtctcagtgtgtctgagctgactactgatcctcggtgtggagcatgctct
gtgtgtcagttaacctgtcactgattgagggagacattttctctcttcca
gcagctgtcagttgcaaatttctccctaaagtaattttgaaattgtaaaa
tgtcttttaacatcaaatttgcagtggaaatatttgtgtgatatatgagt
gtgctacagtgtgtaagtcaaagaacaactctaagtctctccttccccca
ggtaggaccttgggattggactcagatggtcaggcttggtggcaaggacc
tttacctgatgagccattttacttcccaatttaaatattttgtttgcagt
tacctaagtcctaattggtcgtaactcattcttaaagtgatattttccag
aggcatcaatcacagcaggcttaacgtgatggctgctgtctcctctaagt
aagtcatacagtatagagcctcaagaactccataataacttgaagatttg
agcatttaattattttcaaaagcttttgttgtatttatcatgagtgtgga
agggagcatcaggcactgctttatgaatttgcccaccagtttaagaacca
aggctactttttgtagagactcacattttaatacctagcactcatgttga
gttactcacaaccaccagtaattttagtccagcagatcttacaccttgct
tccactgcacttgcacgaacatgcagtgtgtgtgcaagcgtgcgcatgcg
cacaacacacacacaaccatcaaaaatactacatctttacaaagaataca
tacatcattggtgagagaaattggagcttgagtattgactctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870531
seq2: B6Ng01-148L09.b_350_535

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||| ||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAGCTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAA  186
      |||| |||||||||||||||||||||||||||||||
seq2  GGACTTGCAAACTTTATATGCCCCAGTACAGGGGAA  186

seq1: chr4_102823419_102824522
seq2: B6Ng01-148L09.g_64_1156

seq1  GAATTCATTTATAAGTCATAGTCAACTTCTCAGATTGTGTATTCAGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATAAGTCATAGTCAACTTCTCAGATTGTGTATTCAGTGCA  50

seq1  GTTATTTATGACTTTCTGTTATCTGTCATAAGGTTTGTTTACATTTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTATGACTTTCTGTTATCTGTCATAAGGTTTGTTTACATTTTAAA  100

seq1  AATAATAATGTTTTTATTCATTCTTTGAGAATTTCATACAGTGTGTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATGTTTTTATTCATTCTTTGAGAATTTCATACAGTGTGTTTTT  150

seq1  ATATTCTTTTCCTGTAACTCCTCCCATATCCTGTCCAACCATCTCCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTTTCCTGTAACTCCTCCCATATCCTGTCCAACCATCTCCATGT  200

seq1  TACTTTCCTCTTTGAAGTACACATACATGCAGACACACACATCGCAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCCTCTTTGAAGTACACATACATGCAGACACACACATCGCAGTGC  250

seq1  GTCTCAGTGTGTCTGAGCTGACTACTGATCCTCGGTGTGGAGCATGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGTGTGTCTGAGCTGACTACTGATCCTCGGTGTGGAGCATGCTCT  300

seq1  GTGTGTCAGTTAACCTGTCACTGATTGAGGGAGACATTTTCTCTCTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCAGTTAACCTGTCACTGATTGAGGGAGACATTTTCTCTCTTCCA  350

seq1  GCAGCTGTCAGTTGCAAATTTCTCCCTAAAGTAATTTTGAAATTGTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGTCAGTTGCAAATTTCTCCCTAAAGTAATTTTGAAATTGTAAAA  400

seq1  TGTCTTTTAACATCAAATTTGCAGTGGAAATATTTGTGTGATATATGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTAACATCAAATTTGCAGTGGAAATATTTGTGTGATATATGAGT  450

seq1  GTGCTACAGTGTGTAAGTCAAAGAACAACTCTAAGTCTCTCCTTCCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTACAGTGTGTAAGTCAAAGAACAACTCTAAGTCTCTCCTTCCCCCA  500

seq1  GGTAGGACCTTGGGATTGGACTCAGATGGTCAGGCTTGGTGGCAAGGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGACCTTGGGATTGGACTCAGATGGTCAGGCTTGGTGGCAAGGACC  550

seq1  TTTACCTGATGAGCCATTTTACTTCCCAATTTAAATATTTTGTTTGCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTGATGAGCCATTTTACTTCCCAATTTAAATATTTTGTTTGCAGT  600

seq1  TACCTAAGTCCTAATTGGTCGTAACTCATTCTTAAAGTGATATTTTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAGTCCTAATTGGTCGTAACTCATTCTTAAAGTGATATTTTCCAG  650

seq1  AGGCATCAATCACAGCAGGCTTAACGTGATGGCTGCTGTCTCCTCTAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCAATCACAGCAGGCTTAACGTGATGGCTGCTGTCTCCTCTAAGT  700

seq1  AAGTCATACAGTATAGAGCCTCAAGAACTCCATAATAACTTGAAGATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATACAGTATAGAGCCTCAAGAACTCCATAATAACTTGAAGATTTG  750

seq1  AGCATTTAATTATTTTCAAAAGCTTTTTGTTGTATTTATCATGAGTGTGG  800
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGCATTTAATTATTTTCAAAAGC-TTTTGTTGTATTTATCATGAGTGTGG  799

seq1  AAGGGAGCATCAGGCACTGC-TTATGAA-TTGCCCACCAG-TTAAGAACC  847
      |||||||||||||||||||| ||||||| ||||||||||| |||||||||
seq2  AAGGGAGCATCAGGCACTGCTTTATGAATTTGCCCACCAGTTTAAGAACC  849

seq1  AAGGCTAC-TTTTGTAGAGACTCACA-TTTAATACCTAGCACTCATGTTG  895
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  AAGGCTACTTTTTGTAGAGACTCACATTTTAATACCTAGCACTCATGTTG  899

seq1  AGTTACTCACAACCACCAGTAATTTTAGGTCCAGCAGATCTTACACCTTT  945
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  AGTTACTCACAACCACCAGTAATTTTA-GTCCAGCAGATCTTACACCTT-  947

seq1  GGCTTCCACTGGCACTTGCACGAACATGCAAGTGTGTGTGCAAGCGTGCG  995
       ||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  -GCTTCCACT-GCACTTGCACGAACATGC-AGTGTGTGTGCAAGCGTGCG  994

seq1  CATGCGCACAAACACACACACACACAATCAAAAATAACTACATCTTTAAC  1045
      ||||||||| |||||||||||| || ||||||||| ||||||||||| ||
seq2  CATGCGCAC-AACACACACACA-ACCATCAAAAAT-ACTACATCTTT-AC  1040

seq1  AAAAGAAAAACATACATCAGTGGTGAAAGAGAAATTTGGAGCTTTGAGTA  1095
      |||   || |||||||||| |||||  ||||||| ||||||| |||||||
seq2  AAA--GAATACATACATCATTGGTG--AGAGAAA-TTGGAGC-TTGAGTA  1084

seq1  TTGACTCTC  1104
      |||||||||
seq2  TTGACTCTC  1093