BAC Information

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BAC

Clone NameB6Ng01-150G13
ChromosomeY (Build37)8 (Build37)
Map Location 1,870,346 - 1,870,55334,711,108 - 34,712,263
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150G13.bB6Ng01-150G13.g
ACCDH946495DH946496
length4941,131
definitionDH946495|Mus musculus domesticus DNA, BAC clone: B6Ng01-150G13, 5' end.DH946496|Mus musculus domesticus DNA, BAC clone: B6Ng01-150G13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,553)(34,711,108 - 34,712,263)
sequence
tgtttttacgttgttatactttcagaacaaaacacccatagaaggagtta
cagagacaaaatttggagctgtgacgaaaggatggaccatctagtgattg
ccatatgcagggatccatcccataatcagcttccaaatgctgacaccatt
gcatacactagcaagatttcgctgaaaggacccagatatagctctctctt
gtgagactatgccggggcctagcaaacacagaagtggatgatcacagtca
gctattggatgggtcacacggcccctaatggaggagctagagaaattacc
caaggagctaaagggaactgcaaccctataggtagaacaacaatatgaac
taaccagtacccgggagctcttgtctttagctgcgtatgtatcaaaagat
ggcctagtcggccatcactgcaaagagaggcccattggacttgcaaactt
tatatgccccagtacaggggaacgccagggccaaaaagggggag
gaattctgactggctgaacttaaataggggggatggagccggctcagcag
ctaagaacctgtgctactttttcaagtgaccagaccccacagcaggtggc
tcaccaccactgtcccagacagctccagggaatctgacaaggctggcttc
cccaggtttcattcaacactaatcacacagacatacgattaaaaatgaat
aaatcttcaaacctattataaaatgggaccagaccaccaggtggaagaaa
acagggacacatgcacccgtaggcacatacccgcatgggcataccagggt
catgcacaggccaggaagccagctatttctcccactggcaactccatcct
ctgggctagaggacaaagcagtgggtgacactgaatttgtggagataagc
aaagaaaagagacccacagcctaggatgtaagctcaaaaacacgggataa
ctggtaatccagtttacttagaagtggagtttaaaaaaaaaaaaacttta
aaagactcacaaaccttcctaagagtttaagacttcagtgtgatacttca
aagccatggtacaaccttctgtaagagtggatcctaaaattatcagaaag
tcaaatggaaacacctagccggattcgccacctcttggtttataggttgg
atgtcacaactacaataaggttgactgactcaatttccaaactggacagc
ccagtggtgctccagcttgagagagatcacctaaaaggttacctttaaga
cttaacgaaattacaggttatcacacaagataaataaaagctaactgaga
cgatacacaaacagttttctgagggaaacaccctttttcttcacggctct
actagaagaaagaaactctcctgtgctaagtacttattcaacccacaaag
gcccttggtcaacttgaaagcgcaccaagagccatctatcactccccacc
ccagttaggagtgcctgtatcagaccgataacaaatcctttggtagatcc
tacttctgggaaaaaatgtagacttgacttgatacttagcttcgttaccc
ctcctcgcagctccttgacatggagcgagttagcctattaaaagagtatg
aaaaaaagactctatagatgaatagcaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870553
seq2: B6Ng01-150G13.b_340_547

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||| |||||||||||||||||||| |||||||||||||||| ||
seq2  CTAGAGAAATTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTAGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||| ||||||||||||| |||||  ||||||||| || | ||||| |
seq2  ACAACAATATGAACTAACCAGTACCCGGGAGCTCTTGTCTTTAGCTGCGT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200

seq1  AGGGGCAG  208
      ||||| ||
seq2  AGGGGGAG  208

seq1: chr8_34711108_34712263
seq2: B6Ng01-150G13.g_68_1198 (reverse)

seq1  TTTTTGCTTATATCATCTTATTTAGAGTCTTTTTTTTTTTCATTCCTCTT  50
      ||||||| ||| |||||   | |||||||    ||||||||| | |||||
seq2  TTTTTGC-TAT-TCATC---TATAGAGTC----TTTTTTTCA-TACTCTT  40

seq1  TTTTATTGTGGGCTAACTCGCTTCCCCATGTTCAAGAGCCCTGCGAG--A  98
      |    |  | ||||||||||||   ||||||  | |||  |||||||   
seq2  T----TAATAGGCTAACTCGCT---CCATGTCAAGGAG--CTGCGAGGAG  81

seq1  GAGTAACGGAGCTAAGTATTCAAGTCAGAGTCTACATTTTTTTCCCCAGA  148
      | |||||| ||||||||| |||||||| ||||||||||||||  ||||||
seq2  GGGTAACGAAGCTAAGTA-TCAAGTCA-AGTCTACATTTTTT--CCCAGA  127

seq1  AGTTAGGATCCTACCAAAGGATTTTGTTTATCCGTCTGATAACAGGCACT  198
      || |||||| ||||||||||||||   ||||| ||||||| |||||||||
seq2  AG-TAGGAT-CTACCAAAGGATTT--GTTATCGGTCTGAT-ACAGGCACT  172

seq1  CCTTACTTGGGGTGGGGAGTGATAGATGGCTCTTGGTGCGCTTTTCAAGT  248
      ||| || |||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTAAC-TGGGGTGGGGAGTGATAGATGGCTCTTGGTGCGC-TTTCAAGT  220

seq1  TGACC-AGGGCCTTTGTGGGTTGAATAAGTACTTAGCACAGGAGAGTTTC  297
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAGGGCCTTTGTGGGTTGAATAAGTACTTAGCACAGGAGAGTTTC  270

seq1  TTTCTTCTAGTAGAGCCGTGAAG-AAAAGGGTGTTTCCCTCAG-AAACTG  345
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  TTTCTTCTAGTAGAGCCGTGAAGAAAAAGGGTGTTTCCCTCAGAAAACTG  320

seq1  TTTGTGTATCGTCTCAGTTAGCTTTTATTTATCTTGTGTGATAACCTGTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTATCGTCTCAGTTAGCTTTTATTTATCTTGTGTGATAACCTGTA  370

seq1  ATTTCGTTAAGTCTTAAAGGTAACCTTTTAGGTGATCTCTCTCAAGCTGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGTTAAGTCTTAAAGGTAACCTTTTAGGTGATCTCTCTCAAGCTGG  420

seq1  AGCACCACTGGGCTGTCCAGTTTGGAAATTGAGTCAGTCAACCTTATTGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCACTGGGCTGTCCAGTTTGGAAATTGAGTCAGTCAACCTTATTGT  470

seq1  AGTTGTGACATCCAACCTATAAACCAAGAGGTGGCGAATCCGGCTAGGTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGACATCCAACCTATAAACCAAGAGGTGGCGAATCCGGCTAGGTG  520

seq1  TTTCCATTTGACTTTCTGATAATTTTAGGATCCACTCTTACAGAAGGTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTTGACTTTCTGATAATTTTAGGATCCACTCTTACAGAAGGTTG  570

seq1  TACCATGGCTTTGAAGTATCACACTGAAGTCTTAAACTCTTAGGAAGGTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGGCTTTGAAGTATCACACTGAAGTCTTAAACTCTTAGGAAGGTT  620

seq1  TGTGAGTCTTTTAAAGTTTTTTTTTTTTTAAACTCCACTTCTAAGTAAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTCTTTTAAAGTTTTTTTTTTTTTAAACTCCACTTCTAAGTAAAC  670

seq1  TGGATTACCAGTTATCCCGTGTTTTTGAGCTTACATCCTAGGCTGTGGGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTACCAGTTATCCCGTGTTTTTGAGCTTACATCCTAGGCTGTGGGT  720

seq1  CTCTTTTCTTTGCTTATCTCCACAAATTCAGTGTCACCCACTGCTTTGTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTTTGCTTATCTCCACAAATTCAGTGTCACCCACTGCTTTGTC  770

seq1  CTCTAGCCCAGAGGATGGAGTTGCCAGTGGGAGAAATAGCTGGCTTCCTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCCCAGAGGATGGAGTTGCCAGTGGGAGAAATAGCTGGCTTCCTG  820

seq1  GCCTGTGCATGACCCTGGTATGCCCATGCGGGTATGTGCCTACGGGTGCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGCATGACCCTGGTATGCCCATGCGGGTATGTGCCTACGGGTGCA  870

seq1  TGTGTCCCTGTTTTCTTCCACCTGGTGGTCTGGTCCCATTTTATAATAGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCCTGTTTTCTTCCACCTGGTGGTCTGGTCCCATTTTATAATAGG  920

seq1  TTTGAAGATTTATTCATTTTTAATCGTATGTCTGTGTGATTAGTGTTGAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGATTTATTCATTTTTAATCGTATGTCTGTGTGATTAGTGTTGAA  970

seq1  TGAAACCTGGGGAAGCCAGCCTTGTCAGATTCCCTGGAGCTGTCTGGGAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCTGGGGAAGCCAGCCTTGTCAGATTCCCTGGAGCTGTCTGGGAC  1020

seq1  AGTGGTGGTGAGCCACCTGCTGTGGGGTCTGGTCACTTGAAAAAGTAGCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGTGAGCCACCTGCTGTGGGGTCTGGTCACTTGAAAAAGTAGCA  1070

seq1  CAGGTTCTTAGCTGCTGAGCCGGCTCCATCCCCCCTATTTAAGTTCAGCC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCTTAGCTGCTGAGCCGGCTCCATCCCCCCTATTTAAGTTCAGCC  1120

seq1  AGTCAGAATTC  1156
      |||||||||||
seq2  AGTCAGAATTC  1131