BAC Information

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BAC

Clone NameB6Ng01-150I13
ChromosomeY (Build37)8 (Build37)
Map Location 1,870,346 - 1,870,55334,711,139 - 34,712,263
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150I13.bB6Ng01-150I13.g
ACCDH946589DH946590
length4941,102
definitionDH946589|Mus musculus domesticus DNA, BAC clone: B6Ng01-150I13, 5' end.DH946590|Mus musculus domesticus DNA, BAC clone: B6Ng01-150I13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,553)(34,711,139 - 34,712,263)
sequence
tgtttttacgttgttatactttcagaacaaaacacccatagaaggagtta
cagagacaaaatttggagctgtgacgaaaggatggaccatctagtgattg
ccatatgcagggatccatcccataatcagcttccaaatgctgacaccatt
gcatacactagcaagatttcgctgaaaggacccagatatagctctctctt
gtgagactatgccggggcctagcaaacacagaagtggatgatcacagtca
gctattggatgggtcacacggcccctaatggaggagctagagaaattacc
caaggagctaaagggaactgcaaccctataggtagaacaacaatatgaac
taaccagtacccgggagctcttgtctttagctgcgtatgtatcaaaagat
ggcctagtcggccatcactgcaaagagaggcccattggacttgcaaactt
tatatgccccagtacaggggaacgccagggccaaaaagggggag
gaattctgactggctgaacttaaataggggggatggagccggctcagcag
ctaagaacctgtgctactttttcaagtgaccagaccccacagcaggtggc
tcaccaccactgtcccagacagctccagggaatctgacaaggctggcttc
cccaggtttcattcaacactaatcacacagacatacgattaaaaatgaat
aaatcttcaaacctattataaaatgggaccagaccaccaggtggaagaaa
acagggacacatgcacccgtaggcacatacccgcatgggcataccagggt
catgcacaggccaggaagccagctatttctcccactggcaactccatcct
ctgggctagaggacaaagcagtgggtgacactgaatttgtggagataagc
aaagaaaagagacccacagcctaggatgtaagctcaaaaacacgggataa
ctggtaatccagtttacttagaagtggagtttaaaaaaaaaaaaacttta
aaagactcacaaaccttcctaagagtttaagacttcagtgtgatacttca
aagccatggtacaaccttctgtaagagtggatcctaaaattatcagaaag
tcaaatggaaacacctagccggattcgccacctcttggtttataggttgg
atgtcacaactacaataaggttgactgactcaatttccaaactggacagc
ccagtggtgctccagcttgagagagatcacctaaaaggttacctttaaga
cttaacgaaattacaggttatcacacaagataaataaaagctaactgaga
cgatacacaaacagtttctgagggaaacaccctttttcttcacggctcta
ctagaagaaagaaactctcctgtgctaagtacttattcaacccacaaagg
ccctggtcacttgaaaagcgcaccaagagccatctatcactccccacccc
agtatgatgcctgtatcagacgataacaaatccttggtaggatcctaact
tctgggaaaaatgtagactctacttgatacttagcttcgttactctctcc
gcaggctcttgacttgggagcgagttgccccaataaaaggatgaaaaaaa
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870553
seq2: B6Ng01-150I13.b_339_546

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||| |||||||||||||||||||| |||||||||||||||| ||
seq2  CTAGAGAAATTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTAGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||| ||||||||||||| |||||  ||||||||| || | ||||| |
seq2  ACAACAATATGAACTAACCAGTACCCGGGAGCTCTTGTCTTTAGCTGCGT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200

seq1  AGGGGCAG  208
      ||||| ||
seq2  AGGGGGAG  208

seq1: chr8_34711139_34712263
seq2: B6Ng01-150I13.g_67_1168 (reverse)

seq1  TTTTTTTTTCATTCCTCTTTTTTATTGTGGGCTAACTCGCTTCCCCATGT  50
      |||||||||||| |     |||||||| |||| ||||||||  |||| | 
seq2  TTTTTTTTTCATCC-----TTTTATTG-GGGC-AACTCGCT--CCCAAG-  40

seq1  TCAAGAGCCCTGC-GAGAGAGTAACGGAGCTAAGTATTCAAGTCAGAGTC  99
      ||||||| ||||| |||||||||||| ||||||||| |||||| ||||||
seq2  TCAAGAG-CCTGCGGAGAGAGTAACGAAGCTAAGTA-TCAAGT-AGAGTC  87

seq1  TACATTTTTTTCCCCAGAAGTTAGGATCCTACCAAAGGATTTTGTTTATC  149
      |||||||||   ||||||||||||||||||||| ||||||||   |||| 
seq2  TACATTTTT---CCCAGAAGTTAGGATCCTACC-AAGGATTT--GTTAT-  130

seq1  CGTCTGATAACAGGCACTCCTTACTTGGGGTGGGGAGTGATAGATGGCTC  199
      |||||||| |||||||   | ||| |||||||||||||||||||||||||
seq2  CGTCTGAT-ACAGGCA--TCATAC-TGGGGTGGGGAGTGATAGATGGCTC  176

seq1  TTGGTGCGCTTTTCAAGTTGACCAGGGCCTTTGTGGGTTGAATAAGTACT  249
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTGGTGCGCTTTTCAAG-TGACCAGGGCCTTTGTGGGTTGAATAAGTACT  225

seq1  TAGCACAGGAGAGTTTCTTTCTTCTAGTAGAGCCGTGAAG-AAAAGGGTG  298
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGCACAGGAGAGTTTCTTTCTTCTAGTAGAGCCGTGAAGAAAAAGGGTG  275

seq1  TTTCCCTCAGAAACTGTTTGTGTATCGTCTCAGTTAGCTTTTATTTATCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCAGAAACTGTTTGTGTATCGTCTCAGTTAGCTTTTATTTATCT  325

seq1  TGTGTGATAACCTGTAATTTCGTTAAGTCTTAAAGGTAACCTTTTAGGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATAACCTGTAATTTCGTTAAGTCTTAAAGGTAACCTTTTAGGTG  375

seq1  ATCTCTCTCAAGCTGGAGCACCACTGGGCTGTCCAGTTTGGAAATTGAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTCAAGCTGGAGCACCACTGGGCTGTCCAGTTTGGAAATTGAGT  425

seq1  CAGTCAACCTTATTGTAGTTGTGACATCCAACCTATAAACCAAGAGGTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAACCTTATTGTAGTTGTGACATCCAACCTATAAACCAAGAGGTGG  475

seq1  CGAATCCGGCTAGGTGTTTCCATTTGACTTTCTGATAATTTTAGGATCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATCCGGCTAGGTGTTTCCATTTGACTTTCTGATAATTTTAGGATCCA  525

seq1  CTCTTACAGAAGGTTGTACCATGGCTTTGAAGTATCACACTGAAGTCTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACAGAAGGTTGTACCATGGCTTTGAAGTATCACACTGAAGTCTTA  575

seq1  AACTCTTAGGAAGGTTTGTGAGTCTTTTAAAGTTTTTTTTTTTTTAAACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTAGGAAGGTTTGTGAGTCTTTTAAAGTTTTTTTTTTTTTAAACT  625

seq1  CCACTTCTAAGTAAACTGGATTACCAGTTATCCCGTGTTTTTGAGCTTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTAAGTAAACTGGATTACCAGTTATCCCGTGTTTTTGAGCTTAC  675

seq1  ATCCTAGGCTGTGGGTCTCTTTTCTTTGCTTATCTCCACAAATTCAGTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGGCTGTGGGTCTCTTTTCTTTGCTTATCTCCACAAATTCAGTGT  725

seq1  CACCCACTGCTTTGTCCTCTAGCCCAGAGGATGGAGTTGCCAGTGGGAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTGCTTTGTCCTCTAGCCCAGAGGATGGAGTTGCCAGTGGGAGA  775

seq1  AATAGCTGGCTTCCTGGCCTGTGCATGACCCTGGTATGCCCATGCGGGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTGGCTTCCTGGCCTGTGCATGACCCTGGTATGCCCATGCGGGTA  825

seq1  TGTGCCTACGGGTGCATGTGTCCCTGTTTTCTTCCACCTGGTGGTCTGGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTACGGGTGCATGTGTCCCTGTTTTCTTCCACCTGGTGGTCTGGT  875

seq1  CCCATTTTATAATAGGTTTGAAGATTTATTCATTTTTAATCGTATGTCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTATAATAGGTTTGAAGATTTATTCATTTTTAATCGTATGTCTG  925

seq1  TGTGATTAGTGTTGAATGAAACCTGGGGAAGCCAGCCTTGTCAGATTCCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTAGTGTTGAATGAAACCTGGGGAAGCCAGCCTTGTCAGATTCCC  975

seq1  TGGAGCTGTCTGGGACAGTGGTGGTGAGCCACCTGCTGTGGGGTCTGGTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTGTCTGGGACAGTGGTGGTGAGCCACCTGCTGTGGGGTCTGGTC  1025

seq1  ACTTGAAAAAGTAGCACAGGTTCTTAGCTGCTGAGCCGGCTCCATCCCCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAAAAGTAGCACAGGTTCTTAGCTGCTGAGCCGGCTCCATCCCCC  1075

seq1  CTATTTAAGTTCAGCCAGTCAGAATTC  1125
      |||||||||||||||||||||||||||
seq2  CTATTTAAGTTCAGCCAGTCAGAATTC  1102