BAC Information

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BAC

Clone NameB6Ng01-153O04
Chromosome2 (Build37)Y (Build37)
Map Location 56,269,549 - 56,270,7061,870,346 - 1,870,505
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153O04.bB6Ng01-153O04.g
ACCDH949074DH949075
length1,155494
definitionDH949074|Mus musculus domesticus DNA, BAC clone: B6Ng01-153O04, 5' end.DH949075|Mus musculus domesticus DNA, BAC clone: B6Ng01-153O04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,269,549 - 56,270,706)(1,870,346 - 1,870,505)
sequence
gaattcatagggagattaacccacagattaggtcagaatccacatgacct
aatcactttcccttagctcaacctgtaaacattggtaaatgtatagtatc
aaaattcctttgaaatatggctctctatgcttgtacattagtgtataatc
tcagtcttcatggagtgtcattgggcagtagatggtagtaaatatagtga
ctcatagctggtcaaaatgaaaagaattcctgtgcagttcacggccacaa
aggggaaatctataaaaacgtatttatgccttttgtgtaaatataaattt
tacacatatttcagaataattttcatgacatgaaagtactatgatgaaga
tatgcaatatctacacgtgagtcaatgtcttgattggaatatatagatat
tctatttatctgagttagagttgggtattttctaaaactataaaaatgtt
acttagtagcatatttattcttagtcactgataatgtgatattacaatta
aagtgcttttggcttatgtttttaaaactattatttcaaagcaatggtcc
gtttttacctagggtacagcattttctggattaaagcaaattcacctttt
caatgacagctactgtgtatttggacaacaccaagaaatccattaaaaac
actgctagtgttctagtgctgcctttcttccaataaattatttttcaaat
gatcaaactgtgtcattttatttgtaatgctattaaaaataatatctaaa
gtacttaaactaattatgcctattttgtaagattaattatcattaataat
ttaacatattttatcatttaagtcagtatccgttctgatctttaacttta
gagagcgcactgtatatgtgccacataattagggctttttgtatcacata
attaaggctaatacaaggaaatcagactaatgagatcaaatcaaactgaa
ttatttaagcttttttctttattttagaggtaggatatttagtaattaaa
tacctgatttcattttctggaacttgttattgccatcttggtgttaagtg
gctttgaacaaagccttccaaaatgtttttgtggaaacctaagaaaacaa
ccacctcaaggcctacactggagccaaaaaaataataaagggagctatgt
ttaga
tttgtttggctctgagccccattttttagtggggttatttgattttctgg
agtctaccttctttagttctttatacatattggatattagtcccctatct
gatttaggataggtaaagatcctttcccaatctgttggtggcctttttgt
cttattgacggtgtcttttgccttacagaagctttgcactttcatgaggt
tccatttgtcaattctcgatcttacagcacaagttattgctctcttgtga
gactatgccggggcctagcaaacacagaagtggatgctcacagtcagcta
ttggatggatcacggggcccccaatggaggagctagagaaagtacccaag
gagctaaagggaactgcaatcctatcggtggaacaacattatgaactaac
cactaccccctggagctcatgtctctagctgcatatgtatcaaaagatgg
cctagtcggccatcactggaaagagaggcccattggtcatgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_56269549_56270706
seq2: B6Ng01-153O04.b_44_1198

seq1  GAATTCATAGGGAGATTAACCCACAGATTAGGTCAGAATCCACATGACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGGAGATTAACCCACAGATTAGGTCAGAATCCACATGACCT  50

seq1  AATCACTTTCCCTTAGCTCAACCTGTAAACATTGGTAAATGTATAGTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTTTCCCTTAGCTCAACCTGTAAACATTGGTAAATGTATAGTATC  100

seq1  AAAATTCCTTTGAAATATGGCTCTCTATGCTTGTACATTAGTGTATAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCTTTGAAATATGGCTCTCTATGCTTGTACATTAGTGTATAATC  150

seq1  TCAGTCTTCATGGAGTGTCATTGGGCAGTAGATGGTAGTAAATATAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTCATGGAGTGTCATTGGGCAGTAGATGGTAGTAAATATAGTGA  200

seq1  CTCATAGCTGGTCAAAATGAAAAGAATTCCTGTGCAGTTCACGGCCACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGCTGGTCAAAATGAAAAGAATTCCTGTGCAGTTCACGGCCACAA  250

seq1  AGGGGAAATCTATAAAAACGTATTTATGCCTTTTGTGTAAATATAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAATCTATAAAAACGTATTTATGCCTTTTGTGTAAATATAAATTT  300

seq1  TACACATATTTCAGAATAATTTTCATGACATGAAAGTACTATGATGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATATTTCAGAATAATTTTCATGACATGAAAGTACTATGATGAAGA  350

seq1  TATGCAATATCTACACGTGAGTCAATGTCTTGATTGGAATATATAGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAATATCTACACGTGAGTCAATGTCTTGATTGGAATATATAGATAT  400

seq1  TCTATTTATCTGAGTTAGAGTTGGGTATTTTCTAAAACTATAAAAATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTATCTGAGTTAGAGTTGGGTATTTTCTAAAACTATAAAAATGTT  450

seq1  ACTTAGTAGCATATTTATTCTTAGTCACTGATAATGTGATATTACAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTAGCATATTTATTCTTAGTCACTGATAATGTGATATTACAATTA  500

seq1  AAGTGCTTTTGGCTTATGTTTTTAAAACTATTATTTCAAAGCAATGGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTTTTGGCTTATGTTTTTAAAACTATTATTTCAAAGCAATGGTCC  550

seq1  GTTTTTACCTAGGGTACAGCATTTTCTGGATTAAAGCAAATTCACCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTACCTAGGGTACAGCATTTTCTGGATTAAAGCAAATTCACCTTTT  600

seq1  CAATGACAGCTACTGTGTATTTGGACAACACCAAGAAATCCATTAAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACAGCTACTGTGTATTTGGACAACACCAAGAAATCCATTAAAAAC  650

seq1  ACTGCTAGTGTTCTAGTGCTGCCTTTCTTCCAATAAATTATTTTTCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAGTGTTCTAGTGCTGCCTTTCTTCCAATAAATTATTTTTCAAAT  700

seq1  GATCAAACTGTGTCATTTTATTTGTAATGCTATTAAAAATAATATCTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAACTGTGTCATTTTATTTGTAATGCTATTAAAAATAATATCTAAA  750

seq1  GTACTTAAACTAATTATGCCTATTTTGTAAGATTAATTATCATTAATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTAAACTAATTATGCCTATTTTGTAAGATTAATTATCATTAATAAT  800

seq1  TTAACATATTTTATCATTTAAGTCAGTATCCGTTCTGATCTTTAACTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATATTTTATCATTTAAGTCAGTATCCGTTCTGATCTTTAACTTTA  850

seq1  GAGAGCGCACTGTATATGTGCCACATAATTAGGGC-TTCTGTATCACATA  899
      ||||||||||||||||||||||||||||||||||| || |||||||||||
seq2  GAGAGCGCACTGTATATGTGCCACATAATTAGGGCTTTTTGTATCACATA  900

seq1  ATTAAGGCTAAATACAAGGAAATCAGACTAATGAGATCAAATCAAACTGA  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGCT-AATACAAGGAAATCAGACTAATGAGATCAAATCAAACTGA  949

seq1  ATTATTTAAGCTTTTTTCTTTAATTTTAGAGGTAGGATATTTAGTAATTA  999
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTATTTAAGCTTTTTTCTTT-ATTTTAGAGGTAGGATATTTAGTAATTA  998

seq1  AATA-CTGATTTCATTTTCTGGAACTTGTATATGCCATCTTGGTGTTTAA  1048
      |||| ||||||||||||||||||||||||   ||||||||||||| ||||
seq2  AATACCTGATTTCATTTTCTGGAACTTGTTATTGCCATCTTGGTG-TTAA  1047

seq1  GTTGCTTTGTACAAAGCCTTCAAAAATG-TTTTGTGAAAACTAAAGGAAA  1097
      || |||||| ||||||||||| |||||| ||||||| ||||  |||  ||
seq2  GTGGCTTTGAACAAAGCCTTCCAAAATGTTTTTGTGGAAACCTAAG--AA  1095

seq1  AACAGCCA-CTCAGTTGCCTCAACTGGAGCCAAAAAAATAAATAGAGGTA  1146
      |||| ||| ||||   ||||  ||||||||||||||||| |||| ||| |
seq2  AACAACCACCTCA-AGGCCTACACTGGAGCCAAAAAAAT-AATAAAGGGA  1143

seq1  GCTATGTATAGA  1158
      ||||||| ||||
seq2  GCTATGTTTAGA  1155

seq1: chrY_1870346_1870505
seq2: B6Ng01-153O04.g_404_565

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||||||||||||||||||||| |||||| ||||| ||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGAACTGCAATCCTATCGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCC--TGAGCTCTTGACTCTTGCTGC  98
      |||||||||||||||||||| ||||||   |||||| || |||| |||||
seq2  ACAACATTATGAACTAACCACTACCCCCTGGAGCTCATGTCTCTAGCTGC  100

seq1  ATAGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCA  148
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCA  150

seq1  TTGGACATGCAA  160
      |||| |||||||
seq2  TTGGTCATGCAA  162