BAC Information

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BAC

Clone NameB6Ng01-155C17
Chromosome11 (Build37)Y (Build37)
Map Location 95,857,817 - 95,858,893573,844 - 573,940
singlet/doubletsingletsinglet
Overlap geneIgf2bp1
Upstream genePpp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2
Downstream geneLOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155C17.bB6Ng01-155C17.g
ACCDH950024DH950025
length1,071435
definitionDH950024|Mus musculus domesticus DNA, BAC clone: B6Ng01-155C17, 5' end.DH950025|Mus musculus domesticus DNA, BAC clone: B6Ng01-155C17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(95,857,817 - 95,858,893)(573,844 - 573,940)
sequence
gaattcaagagatcaacctgcctcttcggggatcaaaggtgtgtgctgac
acacccagcttaagaccgacttatttaaggcttttcaacctgctgtatgt
gtctatgttggtgtaggccaaaggacaatctactatttctaggtactttc
tacatacacatagcttgtggaggccaatttggtgtccccaaattggacag
agatggtagtgagccattaggaatgcaactttttcctgggggctagagag
attattttgtggataaaagcattgcctgctctttcacaggacttgggttt
ccttgccagcaccccaaacggtgtctgcagccatccagttccaggagatc
tgacaccctcttctgacttccatgaacgccaggcacccacatggtgcaca
cacttacatgcagggtaatcattcatacttacagtaaaaaataagcaaag
ctttaagccaccgcacctgtataatgagaccctgtcttaaaataagtaaa
tgaatttcaaactctggcgccaggtggtggtggtggtggcatacaacttc
aatcccagcactcaggaggcacacgtaggtggatctctctgtgttcaagg
acaaccaaagctgcacagagcaaccctttccagtctaactacccactcag
attttgcaactgaacatttccatttcctgaaattaactctaaatgaaaca
tttggaaaattctctctcttcctttttttttggtttaagattatttatta
tatgtaagtacatggtagctgtgttcagacacaccagaagagggcatcag
atctcgttatggatggttgctgggatttgaactcaggaccttgggaaaga
gcaatccagtgctcttaaccaatgagccatctcaccagctcccgaaaatt
ctcacttttgctaaagaaatatagtctaactagaatacacagaacatcaa
cattcagagaaaaatcagaaacacttgatgcttgccactgcaaagagaaa
acttccttttggccctccccaaacccagcaaaatcccaacctgccattag
ttcttctgtgccttctagccc
tttgtgcaactgaggtgaggaagtcagaaaaatataacactcttcaatga
ctgtgaaatctggatgctcctgttatcatccttacttatttatttattca
tttatattttatgtgcattggtgtctttcatgaatgtatatctatgtgag
ggtgtcagatcctggagtaacaggcagttgagagtcgtcatgtgggtgct
gggaattgatcccaagttctcttggaagagcagtcagtgctcttaaccac
taagccatctctccagctcacttttaaatgcttttttgtttgtctttgtc
tttatttttgtttttgcttttgctttgtttttaattcgagacagagtttc
tctgtattattgctctggctgtcctggaactcactctgtagaccatattg
gcctctaaatcacagactgtgcctgcctctgcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_95857817_95858893
seq2: B6Ng01-155C17.b_47_1117

seq1  GAATTCAAGAGATCAACCTGCCTCTTCGGGGATCAAAGGTGTGTGCTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGATCAACCTGCCTCTTCGGGGATCAAAGGTGTGTGCTGAC  50

seq1  ACACCCAGCTTAAGACCGACTTATTTAAGGCTTTTCAACCTGCTGTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAGCTTAAGACCGACTTATTTAAGGCTTTTCAACCTGCTGTATGT  100

seq1  GTCTATGTTGGTGTAGGCCAAAGGACAATCTACTATTTCTAGGTACTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGTTGGTGTAGGCCAAAGGACAATCTACTATTTCTAGGTACTTTC  150

seq1  TACATACACATAGCTTGTGGAGGCCAATTTGGTGTCCCCAAATTGGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACACATAGCTTGTGGAGGCCAATTTGGTGTCCCCAAATTGGACAG  200

seq1  AGATGGTAGTGAGCCATTAGGAATGCAACTTTTTCCTGGGGGCTAGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTAGTGAGCCATTAGGAATGCAACTTTTTCCTGGGGGCTAGAGAG  250

seq1  ATTATTTTGTGGATAAAAGCATTGCCTGCTCTTTCACAGGACTTGGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTGTGGATAAAAGCATTGCCTGCTCTTTCACAGGACTTGGGTTT  300

seq1  CCTTGCCAGCACCCCAAACGGTGTCTGCAGCCATCCAGTTCCAGGAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCAGCACCCCAAACGGTGTCTGCAGCCATCCAGTTCCAGGAGATC  350

seq1  TGACACCCTCTTCTGACTTCCATGAACGCCAGGCACCCACATGGTGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCCTCTTCTGACTTCCATGAACGCCAGGCACCCACATGGTGCACA  400

seq1  CACTTACATGCAGGGTAATCATTCATACTTACAGTAAAAAATAAGCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACATGCAGGGTAATCATTCATACTTACAGTAAAAAATAAGCAAAG  450

seq1  CTTTAAGCCACCGCACCTGTATAATGAGACCCTGTCTTAAAATAAGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGCCACCGCACCTGTATAATGAGACCCTGTCTTAAAATAAGTAAA  500

seq1  TGAATTTCAAACTCTGGCGCCAGGTGGTGGTGGTGGTGGCATACAACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTCAAACTCTGGCGCCAGGTGGTGGTGGTGGTGGCATACAACTTC  550

seq1  AATCCCAGCACTCAGGAGGCACACGTAGGTGGATCTCTCTGTGTTCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTCAGGAGGCACACGTAGGTGGATCTCTCTGTGTTCAAGG  600

seq1  ACAACCAAAGCTGCACAGAGCAACCCTTTCCAGTCTAACTACCCACTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAAAGCTGCACAGAGCAACCCTTTCCAGTCTAACTACCCACTCAG  650

seq1  ATTTTGCAACTGAACATTTCCATTTCCTGAAATTAACTCTAAATGAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCAACTGAACATTTCCATTTCCTGAAATTAACTCTAAATGAAACA  700

seq1  TTTGGAAAATTCTCTCTCTTCCTTTTTTTTTGGTTTAAGATTATTTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAAATTCTCTCTCTTCCTTTTTTTTTGGTTTAAGATTATTTATTA  750

seq1  TATGTAAGTACATGGTAGCTGTGTTCAGACACACCAGAAGAGGGCATCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAGTACATGGTAGCTGTGTTCAGACACACCAGAAGAGGGCATCAG  800

seq1  ATCTCGTTATGGATGGTTGCTGGGATTTGAACTCAGGACCTTGGG-AAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCTCGTTATGGATGGTTGCTGGGATTTGAACTCAGGACCTTGGGAAAGA  850

seq1  GC-AGCCAGTGCTCTTAACCAATGAGCCATCTCACCAGCTCCCGAAAATT  898
      || | |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCAGTGCTCTTAACCAATGAGCCATCTCACCAGCTCCCGAAAATT  900

seq1  CTCACTTTTGCTAAAGAAATAATAGTCTAACTAGAATACACAGAACAACA  948
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  CTCACTTTTGCTAAAGAAAT-ATAGTCTAACTAGAATACACAGAACATCA  949

seq1  ACAATTCAGAGAAAATCAAGAAAACACTTGATGCTTGCCACTGCAAAGAG  998
      || ||||||||||||   || |||||||||||||||||||||||||||||
seq2  AC-ATTCAGAGAAAAATCAG-AAACACTTGATGCTTGCCACTGCAAAGAG  997

seq1  AAAAACTTCCTTTTGGCCCTCCCCAAACCCAGCAAAAATCCCCAACCTGC  1048
       ||||||||||||||||||||||||||||||||||||   ||||||||| 
seq2  -AAAACTTCCTTTTGGCCCTCCCCAAACCCAGCAAAA--TCCCAACCTG-  1043

seq1  CCATTAGTTTCTTCTGTGCCTTCTAGCCC  1077
      ||||||| |||||||||||||||||||||
seq2  CCATTAG-TTCTTCTGTGCCTTCTAGCCC  1071

seq1: chrY_573844_573940
seq2: B6Ng01-155C17.g_404_504

seq1  TTCGAGATAGGGTTTCTCTG---TATAGCCCTGGCTGTCCTGGAACTCAC  47
      ||||||| || |||||||||   ||| || ||||||||||||||||||||
seq2  TTCGAGACAGAGTTTCTCTGTATTATTGCTCTGGCTGTCCTGGAACTCAC  50

seq1  TCTGTAGACCAGGCTGGCCACGAACTCAGA-AATCTGCCTGCCTCTGCCT  96
      |||||||||||   ||||| | || ||| | | | |||||||||||||||
seq2  TCTGTAGACCATATTGGCCTCTAAATCACAGACTGTGCCTGCCTCTGCCT  100

seq1  C  97
      |
seq2  C  101