BAC Information

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BAC

Clone NameB6Ng01-155K17
ChromosomeY (Build37)
Map Location 1,098,908 - 1,234,455
singlet/doubletdoublet
Overlap geneEG667079
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155K17.bB6Ng01-155K17.g
ACCDH950386DH950387
length1,1731,158
definitionDH950386|Mus musculus domesticus DNA, BAC clone: B6Ng01-155K17, 5' end.DH950387|Mus musculus domesticus DNA, BAC clone: B6Ng01-155K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(1,233,280 - 1,234,455)(1,098,908 - 1,100,070)
sequence
gaattcccctttgcttttttcttgtttctccaacttcttcatcaagattt
tgcatttccttttgttttggaagtttctcacctaatcttaaatacataca
ttagggccggtatttaaaatccttgctggtgattctgacaatggtttcct
ccttatatctccaccagggaactgattttttccctctgcttctcatttgg
ggaatggtcatggtgtgacagtgatttccattttgacttcattctcctaa
tgtcagcatgtcctacttatagactgtggcccaagagctgtttaattttc
ataattttttgatgttttgatttttctgagtttgtcttattgaataaagg
gaattattcctccagaccatactggcaggcatgctttagaggggtcagga
ctagtggtcctcagtcttccaaatgttgtgatcctttaatctggtcaacc
catggtttgaaaaccactaatctggaaacactggggatacccttatcgat
gtagattttttgtccagtgttgctgtgcagaagtctccatcccttgaagg
aaaaggatgttccaagaacaggcttcttcttcccagtcccctaacctgtg
tcctcacctttacaccttgttgatgaccactgatgtatctatcaaatgac
tccagacttagtaaattacagtaatactgttttcttttaagtcctagaaa
atggtggttctaaaaatggtaccattagctaaaagcagtggctggcactc
ttcctaaggatcccttacctagtgaccccttagatccctaaaggccaaca
gtagatggctgagtccctcctgggctgtacctctttgatctatactcacc
ttctatgctgcttactttcatgaagagaacacatgataacactgaaccca
tcccatcttcagtcagcacaaatagcctaattatttttcccatatggcct
ggttgctcatgattctgaggcataatcatacatgttgtattgtcaagaga
atgacactgattggctagtatataatgaagcatatttttgtggtgacttc
tgtttcaggagcatgaacaatttcaagataaaagacacccatcagcgaat
gaaggaatctgtgggaaggtgcactacagaacggatcgaatggactcaaa
gacaaagggagacccactccctt
gaattctcagcacatatttggaaagacattgacaggtgttgattttgtga
gattctagctgctgtgcatttgtggtgaggctctatacttctctggcatg
taatcgagtgctggatattagtgcaagcagtttaaaggtcctagaactca
cattttctttatcagtgctagattgtaaggctctgagtcttcctgtatct
tgtgtcatatattctgagacaatattgctccctgtaattttcctgcaccc
cacttgggtctctcagtctctttctgtctgtgtctatctgtcttcttctc
tgtctcagtgactttatgtctcccctgtgtgtttgtgtgtaaacatttac
atacttgattattcctctagaatttgggagccagggttttcccttttggc
cttagaatatgtctctttcatgcttcaagttgctgccaatgctgaagtgt
ggaagccccactttaaacagcagtactcttggcataattggtcacattgc
tgccattttggaattatttatcagtttataatattgtcctgttattggtt
ttcaaaccaatgtctgattccatggtaataattatgcgaagtataaaatc
tctgatgtgaaaactgagaaatgaagtcaccatgctcctgaaaacataat
tgcaaagactgcacttccagtcctactgagtgaccttatgtaggcagggc
actcaccagttggacacatagtctttgccagccttgacccaggataaaat
gatttatagtcaagataatttcatagtacacaggatccaggatatggcac
cctctggtatgggttctttaatgacacacccttagttgatgtgacgtttt
aagcaagtgctcattgggatctacattcctaggaacattttatatcacag
gtcaaattctttctatgagaagctaaagataggtcatgagtagatatacc
tatagagattagggaatgagaaaaatgatctcagagaatctcaagtatct
tcagaagaagaagaacttctactgctagtggcttattcaggatcctcaaa
ttttggaatagaatatacgggacgtgttttttgactggaaatctgtatga
aaaatttcattcctttttgcccttactatcagcacacaccgtgtccttta
gacaaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1233280_1234455
seq2: B6Ng01-155K17.b_43_1215 (reverse)

seq1  AAGGGAGTTTGGCTCCCTCTTTTGTCTTTCTAGTCCATTCGATCCCTTCT  50
      ||||||||  | |||||   |||||||||  |||||||||||||| ||||
seq2  AAGGGAGTGGGTCTCCC---TTTGTCTTT-GAGTCCATTCGATCCGTTCT  46

seq1  GTGATGACAACATCACACAAGAATTCCTTCATCTGCTGAT-GGTGTC-TT  98
      ||  || || | || ||||   ||||||||||  |||||| |||||| ||
seq2  GTAGTG-CACCTTCCCACA--GATTCCTTCATTCGCTGATGGGTGTCTTT  93

seq1  TATCTTGAAATTGTTTCATGCTCCTGAAACAGAAGTCA-CAC-AAAATAT  146
      ||||||||||||| |||||||||||||||||||||||| ||| |||||||
seq2  TATCTTGAAATTG-TTCATGCTCCTGAAACAGAAGTCACCACAAAAATAT  142

seq1  GCTTCATTATATACTAGCCAATCAGTGTCATTCTCTTGACAATACAACAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATTATATACTAGCCAATCAGTGTCATTCTCTTGACAATACAACAT  192

seq1  GTATGATTATGCCTCAGAATCATGAGCAACCAGGCCATATGGGAAAAATA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATTATGCCTCAGAATCATGAGCAACCAGGCCATATGGGAAAAATA  242

seq1  ATTAGGCTATTTGTGCTGACTGAAGATGGGATGGGTTCAGTGTTATCATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCTATTTGTGCTGACTGAAGATGGGATGGGTTCAGTGTTATCATG  292

seq1  TGTTCTCTTCATGAAAGTAAGCAGCATAGAAGGTGAGTATAGATCAAAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTTCATGAAAGTAAGCAGCATAGAAGGTGAGTATAGATCAAAGA  342

seq1  GGTACAGCCCAGGAGGGACTCAGCCATCTACTGTTGGCC-TTAGGGATCT  395
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGTACAGCCCAGGAGGGACTCAGCCATCTACTGTTGGCCTTTAGGGATCT  392

seq1  AAGGGGTCACTAGGTAAGGGATCCTTAGGAAGAGTGCCAGCCACTGCTTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTCACTAGGTAAGGGATCCTTAGGAAGAGTGCCAGCCACTGCTTT  442

seq1  TAGCTAATGGTACCATTTTTAGAACCACCATTTTCTAGGACTTAAAAGAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAATGGTACCATTTTTAGAACCACCATTTTCTAGGACTTAAAAGAA  492

seq1  AACAGTATTACTGTAATTTACTAAGTCTGGAGTCATTTGATAGATACATC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATTACTGTAATTTACTAAGTCTGGAGTCATTTGATAGATACATC  542

seq1  AGTGGTCATCAACAAGGTGTAAAGGTGAGGACACAGGTTAGGGGACTGGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCATCAACAAGGTGTAAAGGTGAGGACACAGGTTAGGGGACTGGG  592

seq1  AAGAAGAAGCCTGTTCTTGGAACATCCTTTTCCTTCAAGGGATGGAGACT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGCCTGTTCTTGGAACATCCTTTTCCTTCAAGGGATGGAGACT  642

seq1  TCTGCACAGCAACACTGGACAAAAAATCTACATCGATAAGGGTATCCCCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACAGCAACACTGGACAAAAAATCTACATCGATAAGGGTATCCCCA  692

seq1  GTGTTTCCAGATTAGTGGTTTTCAAACCATGGGTTGACCAGATTAAAGGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCCAGATTAGTGGTTTTCAAACCATGGGTTGACCAGATTAAAGGA  742

seq1  TCACAACATTTGGAAGACTGAGGACCACTAGTCCTGACCCCTCTAAAGCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACATTTGGAAGACTGAGGACCACTAGTCCTGACCCCTCTAAAGCA  792

seq1  TGCCTGCCAGTATGGTCTGGAGGAATAATTCCCTTTATTCAATAAGACAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCAGTATGGTCTGGAGGAATAATTCCCTTTATTCAATAAGACAA  842

seq1  ACTCAGAAAAATCAAAACATCAAAAAATTATGAAAATTAAACAGCTCTTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAAAATCAAAACATCAAAAAATTATGAAAATTAAACAGCTCTTG  892

seq1  GGCCACAGTCTATAAGTAGGACATGCTGACATTAGGAGAATGAAGTCAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGTCTATAAGTAGGACATGCTGACATTAGGAGAATGAAGTCAAA  942

seq1  ATGGAAATCACTGTCACACCATGACCATTCCCCAAATGAGAAGCAGAGGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATCACTGTCACACCATGACCATTCCCCAAATGAGAAGCAGAGGG  992

seq1  AAAAAATCAGTTCCCTGGTGGAGATATAAGGAGGAAACCATTGTCAGAAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCAGTTCCCTGGTGGAGATATAAGGAGGAAACCATTGTCAGAAT  1042

seq1  CACCAGCAAGGATTTTAAATACCGGCCCTAATGTATGTATTTAAGATTAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCAAGGATTTTAAATACCGGCCCTAATGTATGTATTTAAGATTAG  1092

seq1  GTGAGAAACTTCCAAAACAAAAGGAAATGCAAAATCTTGATGAAGAAGTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAACTTCCAAAACAAAAGGAAATGCAAAATCTTGATGAAGAAGTT  1142

seq1  GGAGAAACAAGAAAAAAGCAAAGGGGAATTC  1176
      |||||||||||||||||||||||||||||||
seq2  GGAGAAACAAGAAAAAAGCAAAGGGGAATTC  1173

seq1: chrY_1098908_1100070
seq2: B6Ng01-155K17.g_68_1225

seq1  GAATTCTCAGCACATATTTGGAAAGACATTGACAGGTGTTGATTTTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCACATATTTGGAAAGACATTGACAGGTGTTGATTTTGTGA  50

seq1  GATTCTAGCTGCTGTGCATTTGTGGTGAGGCTCTATACTTCTCTGGCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAGCTGCTGTGCATTTGTGGTGAGGCTCTATACTTCTCTGGCATG  100

seq1  TAATCGAGTGCTGGATATTAGTGCAAGCAGTTTAAAGGTCCTAGAACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCGAGTGCTGGATATTAGTGCAAGCAGTTTAAAGGTCCTAGAACTCA  150

seq1  CATTTTCTTTATCAGTGCTAGATTGTAAGGCTCTGAGTCTTCCTGTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTTATCAGTGCTAGATTGTAAGGCTCTGAGTCTTCCTGTATCT  200

seq1  TGTGTCATATATTCTGAGACAATATTGCTCCCTGTAATTTTCCTGCACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCATATATTCTGAGACAATATTGCTCCCTGTAATTTTCCTGCACCC  250

seq1  CACTTGGGTCTCTCAGTCTCTTTCTGTCTGTGTCTATCTGTCTTCTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGTCTCTCAGTCTCTTTCTGTCTGTGTCTATCTGTCTTCTTCTC  300

seq1  TGTCTCAGTGACTTTATGTCTCCCCTGTGTGTTTGTGTGTAAACATTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGTGACTTTATGTCTCCCCTGTGTGTTTGTGTGTAAACATTTAC  350

seq1  ATACTTGATTATTCCTCTAGAATTTGGGAGCCAGGGTTTTCCCTTTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGATTATTCCTCTAGAATTTGGGAGCCAGGGTTTTCCCTTTTGGC  400

seq1  CTTAGAATATGTCTCTTTCATGCTTCAAGTTGCTGCCAATGCTGAAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAATATGTCTCTTTCATGCTTCAAGTTGCTGCCAATGCTGAAGTGT  450

seq1  GGAAGCCCCACTTTAAACAGCAGTACTCTTGGCATAATTGGTCACATTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCCCACTTTAAACAGCAGTACTCTTGGCATAATTGGTCACATTGC  500

seq1  TGCCATTTTGGAATTATTTATCAGTTTATAATATTGTCCTGTTATTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTTGGAATTATTTATCAGTTTATAATATTGTCCTGTTATTGGTT  550

seq1  TTCAAACCAATGTCTGATTCCATGGTAATAATTATGCGAAGTATAAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACCAATGTCTGATTCCATGGTAATAATTATGCGAAGTATAAAATC  600

seq1  TCTGATGTGAAAACTGAGAAATGAAGTCACCATGCTCCTGAAAACATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGTGAAAACTGAGAAATGAAGTCACCATGCTCCTGAAAACATAAT  650

seq1  TGCAAAGACTGCACTTCCAGTCCTACTGAGTGACCTTATGTAGGCAGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGACTGCACTTCCAGTCCTACTGAGTGACCTTATGTAGGCAGGGC  700

seq1  ACTCACCAGTTGGACACATAGTCTTTGCCAGCCTTGACCCAGGATAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCAGTTGGACACATAGTCTTTGCCAGCCTTGACCCAGGATAAAAT  750

seq1  GATTTATAGTCAAGATAATTTCATAGTACACAGGATCCAGGATATGGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATAGTCAAGATAATTTCATAGTACACAGGATCCAGGATATGGCAC  800

seq1  CCTCTGGTATGGGTTCTTTAATGACACACCCTTAGTTGATGTGACGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGTATGGGTTCTTTAATGACACACCCTTAGTTGATGTGACGTTTT  850

seq1  AAGCAAGTGCTCATTGGGATCTACATTCCTAGGAACATTTTATATCACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGTGCTCATTGGGATCTACATTCCTAGGAACATTTTATATCACAG  900

seq1  GTCAAATTCTTTCTATGAGAAGCTAAAGATAGGTCATGAGTAGATAATAC  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCAAATTCTTTCTATGAGAAGCTAAAGATAGGTCATGAGTAGAT-ATAC  949

seq1  CTATAGAGATTAGGGAATGAGAAAAATGAACCTCAGAGAACCTCAAGTAT  1000
      |||||||||||||||||||||||||||| | ||||||||| |||||||||
seq2  CTATAGAGATTAGGGAATGAGAAAAATG-ATCTCAGAGAATCTCAAGTAT  998

seq1  CTCAAGAAGAAGACAGACTTCTACTGCTAAGTGCCTATCAGGGATCCTAC  1050
      ||  |||||||||   |||||||||||||   || |||   ||||||| |
seq2  CTTCAGAAGAAGAAGAACTTCTACTGCTAGTGGCTTATTCAGGATCCT-C  1047

seq1  AAATTTTGGAATAGATATTACGGACCGTGTTTTTTGACTGGAGATTCTGT  1100
      |||||||||||||||   |||||  ||||||||||||||||| | |||||
seq2  AAATTTTGGAATAGAATATACGGGACGTGTTTTTTGACTGGA-AATCTGT  1096

seq1  ATGGAAGATTCTATTCCTTCTGCCCCTTAACTATCAGCACACCACGTGTC  1150
      ||| || |||  ||||||| |  ||||| |||||||||||||  ||||||
seq2  ATGAAAAATTTCATTCCTTTTTGCCCTT-ACTATCAGCACACACCGTGTC  1145

seq1  CTTTAGACAAAGT  1163
      |||||||||||||
seq2  CTTTAGACAAAGT  1158