BAC Information

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BAC

Clone NameB6Ng01-158J19
ChromosomeY (Build37)3 (Build37)
Map Location 1,120,708 - 1,121,08183,254,901 - 83,255,642
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158J19.bB6Ng01-158J19.g
ACCDH952513DH952514
length961968
definitionDH952513|Mus musculus domesticus DNA, BAC clone: B6Ng01-158J19, 5' end.DH952514|Mus musculus domesticus DNA, BAC clone: B6Ng01-158J19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,708 - 1,121,081)(83,254,901 - 83,255,642)
sequence
gaattcccctgtactggggcatataaagtttgcaagtccaatgggcctct
ctttccagtgatggccgactaggccatcttttgatatatatgcagctaga
gtcaagagctccggggtactggttagctcataatgttgttccacctatag
ggttgcagatccctttagctccttggctactttctctagctcctccattg
ggagccctatgatccatccattagctgactgtgagcatccacttctgtgt
ttgctgggccccggcatagtctcacaagagacagctacatctgcgtcctt
tcaataaaatcttgctagtgtatgcaatggtgtcagcgtttggatgctga
ttatggggtggatccctggctatggcagtctctacatggtccatcctttc
atctcagctccaaactccgtctctgtaactccttccatgggtgttttgtt
cccaaatctaaggaggggcatagtgtccacacttcagtcttcattctcct
tgagtttcatgtgtttagcaaattatatcttatatcttgggtatcctagg
tttggggctaatatccacttatcagtgaatacatattgtgtgagtttctt
tgtgaatgtgttacctcactcaggatgatgccctccaggtccatccattt
ggctaggaatttcataaattcattctttttaatagctgagtagtactcca
ttgtgtagatgtaccacattttctgtatccattcctctgttgaggggcat
ctagtttctttccagcttctggctattataaataaaggctgctatgaaca
tagtggagcatgtgtccttcttacctgttggggcatcttctggatatatg
cccaggagaggtattgctggatcctccggtagtactatgtccagttttct
gaggaaccgccagactgatttccagagtggttgtacaagcctgcactccc
accaacaatgg
gaattccatctcttcatacctctcggccttcctgtgagaaatagagaata
tgtgttctaccaaatctaggccatcaaagcatccaattttctgatctaca
gatgactaagtaatttctcccagtggaaatggtgtttatgaggaaatatc
attggtgcagttgctgcctagttaaattctgggatgcgtgcctggaactc
atgggtatcaaaatgactttatgaagtggtccaaagctgactttgtgatt
tagaaatttgggaaataaagagatcaggattttgcaatagtcccacttca
gatgatgtcagtatttaactatgtgctatcaacttctgagaattggcttc
ttgctgatagaattagcttcaactgcccattaaacaacaacataatgcaa
cggccaaagacaatgtccactaacattagttttcctcaagctccattgag
gtgatatgttactaagtaaaaacattgactttgtggatggggagagtggg
agggcaagatgtagctactagtgaccccctgtttagatggcaaatctgct
aggattcactactggaggatttagatttaatattggcttacaagattagg
gttctaattgttgtacccaacaattgagttaccattgactctgaactaag
tttgagtggtgttttccttcatgtggcagctcaactgggttccagagaga
aagatatagcagcaaaacatgggtttgcaagaactgcatcctaaaacgcc
atgggaattttgaagcatggggttggcatgctaacaacccaccagtggaa
acttagtgagctgggtggagagattcagagctctgagtcagacagtctcc
atgagataagaacaggccagccagtgcctgggccggctagcccacttggg
gcctgccagcatagcatgaattgcatcttctaaaatttttctgcacaggt
ggtgaaacaatgtgttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120708_1121081
seq2: B6Ng01-158J19.b_44_417

seq1  ATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCT  50

seq1  TTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGT  100

seq1  CAAGAGCTCCGGGGTACTGGTTAGCTCATAACGTTGTTCCACCTATAGGG  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAAGAGCTCCGGGGTACTGGTTAGCTCATAATGTTGTTCCACCTATAGGG  150

seq1  TTGGAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGG  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGG  200

seq1  AGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTT  250

seq1  GCTGGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGCCTCCTTTC  300
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCTGGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGCGTCCTTTC  300

seq1  AATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATT  350

seq1  ATGGGGTGGATCCCTGGCTATGGC  374
      ||||||||||||||||||||||||
seq2  ATGGGGTGGATCCCTGGCTATGGC  374

seq1: chr3_83254901_83255642
seq2: B6Ng01-158J19.g_68_809 (reverse)

seq1  AGGATGCAGTTCTTGCAAACCCATGTTTTGCTGCTATATCTTTCTCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCAGTTCTTGCAAACCCATGTTTTGCTGCTATATCTTTCTCTCTG  50

seq1  GAACCCAGTTGAGCTGCCACATGAAGGAAAACACCACTCAAACTTAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAGTTGAGCTGCCACATGAAGGAAAACACCACTCAAACTTAGTTC  100

seq1  AGAGTCAATGGTAACTCAATTGTTGGGTACAACAATTAGAACCCTAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAATGGTAACTCAATTGTTGGGTACAACAATTAGAACCCTAATCT  150

seq1  TGTAAGCCAATATTAAATCTAAATCCTCCAGTAGTGAATCCTAGCAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCCAATATTAAATCTAAATCCTCCAGTAGTGAATCCTAGCAGATT  200

seq1  TGCCATCTAAACAGGGGGTCACTAGTAGCTACATCTTGCCCTCCCACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCTAAACAGGGGGTCACTAGTAGCTACATCTTGCCCTCCCACTCT  250

seq1  CCCCATCCACAAAGTCAATGTTTTTACTTAGTAACATATCACCTCAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCCACAAAGTCAATGTTTTTACTTAGTAACATATCACCTCAATGG  300

seq1  AGCTTGAGGAAAACTAATGTTAGTGGACATTGTCTTTGGCCGTTGCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGAGGAAAACTAATGTTAGTGGACATTGTCTTTGGCCGTTGCATTA  350

seq1  TGTTGTTGTTTAATGGGCAGTTGAAGCTAATTCTATCAGCAAGAAGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTTAATGGGCAGTTGAAGCTAATTCTATCAGCAAGAAGCCAA  400

seq1  TTCTCAGAAGTTGATAGCACATAGTTAAATACTGACATCATCTGAAGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGAAGTTGATAGCACATAGTTAAATACTGACATCATCTGAAGTGG  450

seq1  GACTATTGCAAAATCCTGATCTCTTTATTTCCCAAATTTCTAAATCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTGCAAAATCCTGATCTCTTTATTTCCCAAATTTCTAAATCACAA  500

seq1  AGTCAGCTTTGGACCACTTCATAAAGTCATTTTGATACCCATGAGTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCTTTGGACCACTTCATAAAGTCATTTTGATACCCATGAGTTCCA  550

seq1  GGCACGCATCCCAGAATTTAACTAGGCAGCAACTGCACCAATGATATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGCATCCCAGAATTTAACTAGGCAGCAACTGCACCAATGATATTTC  600

seq1  CTCATAAACACCATTTCCACTGGGAGAAATTACTTAGTCATCTGTAGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAACACCATTTCCACTGGGAGAAATTACTTAGTCATCTGTAGATC  650

seq1  AGAAAATTGGATGCTTTGATGGCCTAGATTTGGTAGAACACATATTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTGGATGCTTTGATGGCCTAGATTTGGTAGAACACATATTCTCT  700

seq1  ATTTCTCACAGGAAGGCCGAGAGGTATGAAGAGATGGAATTC  742
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCACAGGAAGGCCGAGAGGTATGAAGAGATGGAATTC  742