BAC Information

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BAC

Clone NameB6Ng01-160P07
ChromosomeY (Build37)7 (Build37)
Map Location 385,501 - 385,763105,058,479 - 105,059,650
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y
Downstream geneTspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160P07.bB6Ng01-160P07.g
ACCDH954198DH954199
length8921,173
definitionDH954198|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P07, 5' end.DH954199|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(385,501 - 385,763)(105,058,479 - 105,059,650)
sequence
gaattcactctgtagaccatgatggcctcaaactcagagatcctcctgcc
tttgcccccatgactgctgggattaaaagaatgcgacaccactgcctggc
tgaagtttgtacttttttgtgatggttgttacccttttgcttctgttgta
tttctttctcttccttccttccttccttccttccttccttccttccttcc
ttcctttctttctttctttctttcttctttctttctgaaactcactttgt
agaccaggctggcctcgaactcagaaatctgcctgcctctgccttccaag
tgctgggattaaaggcgtgcgccaccaccacccggctttctgttgtattt
cgttcacatctgttgtaaggctggtctaataatgatgaacaccttcagat
ttagttgtcttggaagtctgtttttctccttcacttctgaagcacagttt
tgttgttcatgctcttcttacttgacattttttccctttgtgtctttgaa
cacatcacatggtggtgatttgagaaaaaaaatcgcccccataggttcat
gggagtggcattatagggaggtacagccttgttggaggaagtgtctcagt
tcacttcctgctgtctgctaatcaagctgcagagctctcagctccttctc
cagacccttgtctgtctgtatgatgtcatgtctcctgccatgacaataat
ggactgagtctccgaaactgtaagtcagccccaatcaaatgtttccttta
taagagctgttgtggtcacggagtatcttcacagcaatagaaactctaag
acacccattttctcccaacctttaatgtttctgttgagaagtctgtgtaa
ccctctaagatactattgcttttcttttgctgtttttagaga
gaattcatatatttaagctttatccatgatcatccatagttctcagttcc
tctgtgtatcctcactctgtcccaatgaaacttgaatcaactttcagcaa
agagtgtctctgtatatatctccatgtgagtgtctgtacacatacataat
aatgctaactataggaattataagaatgataaaagaatgagatgtgttaa
gtaattacaaacctcacatttgctcagacaaggaaatttagctctgatct
ttattatcaaatggaagaaagaatctatatcttcaagataaatgtaaaaa
acaaaaatcaaacccccaaaacaatccaccagtttaagtaagagactctg
agttacataaaaaattatttcctataacattttcatatgatatttttctc
ttaaataattttttaaattggaagtatggctcaaagtacattacaatgta
acattgtaaaggaccttaaagtccttactggaatacttcgccttgctgga
gtcaaagagtgaacaaaagattcttagccacatatggtgcatgcttatag
ttccagctaacaggtcgagggctggagtttaagacgaaagataggtgtct
tctccagaaagaatagttactctgttgttgccagaggtgaattttaccca
ggaacaaacaaaaccatgtaaaatgaacttcttgtcttacttctttcact
caaaatgtctgtggatccattgtgctttcagtgtgttagttactgtgcta
atattctatataatggcatatgactatggaactattaattttttgagctt
tttttttttcttacagttaatgactacaaataaaacttgtatacttggtc
aatgagataacttactgggtatgagcacctgctgccaagtctgacaactt
gaggacaattttcctgtacctgtagtcgtgaaaagaatttcttcttgcaa
tggactacacacacatgcacatcatggcatggatgcagctccacacacac
acaaaaggataataaccagtcatttcaaggatgattcttgtcactgaggc
ccttactgtcttgtaataagctgcattttaaagattgccaaacactcaac
tcaatttgggtttttttctttctttttagacatcagttctgaaagaatgg
caagccctccctagcctgatcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_385501_385763
seq2: B6Ng01-160P07.b_245_379

seq1  TCCTTTCTTTCTAATGCATCTGTTTTGTGCAGATGATCGTCTATGGAATA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAGTAGTGTACTAATATTATTCATTGATATTGGCTTGGTGTCTAATTTCT  100
                                                |  |||||
seq2  ------------------------------------------TCCTTTCT  8

seq1  TTTTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGGTTTTCTCTATATATA  150
      || ||| ||| ||| ||                   |||||         
seq2  TTCTTTCTTTCTTTCTT------------------CTTTCT---------  31

seq1  GCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTC  200
                | ||| |||||||| |||||||||||||||||||||||||
seq2  ----------TTCTGAAACTCACTTTGTAGACCAGGCTGGCCTCGAACTC  71

seq1  AGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCTTGCGC  250
      |||||||||||||||||||||| || |||||||||||||||||| |||||
seq2  AGAAATCTGCCTGCCTCTGCCTTCCAAGTGCTGGGATTAAAGGCGTGCGC  121

seq1  CACCA-CACCCGGC  263
      ||||| ||||||||
seq2  CACCACCACCCGGC  135

seq1: chr7_105058479_105059650
seq2: B6Ng01-160P07.g_68_1240

seq1  GAATTCATATATTTAAGCTTTATCCATGATCATCCATAGTTCTCAGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATATTTAAGCTTTATCCATGATCATCCATAGTTCTCAGTTCC  50

seq1  TCTGTGTATCCTCACTCTGTCCCAATGAAACTTGAATCAACTTTCAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTATCCTCACTCTGTCCCAATGAAACTTGAATCAACTTTCAGCAA  100

seq1  AGAGTGTCTCTGTATATATCTCCATGTGAGTGTCTGTACACATACATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTCTCTGTATATATCTCCATGTGAGTGTCTGTACACATACATAAT  150

seq1  AATGCTAACTATAGGAATTATAAGAATGATAAAAGAATGAGATGTGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAACTATAGGAATTATAAGAATGATAAAAGAATGAGATGTGTTAA  200

seq1  GTAATTACAAACCTCACATTTGCTCAGACAAGGAAATTTAGCTCTGATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTACAAACCTCACATTTGCTCAGACAAGGAAATTTAGCTCTGATCT  250

seq1  TTATTATCAAATGGAAGAAAGAATCTATATCTTCAAGATAAATGTAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATCAAATGGAAGAAAGAATCTATATCTTCAAGATAAATGTAAAAA  300

seq1  ACAAAAATCAAACCCCCAAAACAATCCACCAGTTTAAGTAAGAGACTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATCAAACCCCCAAAACAATCCACCAGTTTAAGTAAGAGACTCTG  350

seq1  AGTTACATAAAAAATTATTTCCTATAACATTTTCATATGATATTTTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACATAAAAAATTATTTCCTATAACATTTTCATATGATATTTTTCTC  400

seq1  TTAAATAATTTTTTAAATTGGAAGTATGGCTCAAAGTACATTACAATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAATTTTTTAAATTGGAAGTATGGCTCAAAGTACATTACAATGTA  450

seq1  ACATTGTAAAGGACCTTAAAGTCCTTACTGGAATACTTCGCCTTGCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTAAAGGACCTTAAAGTCCTTACTGGAATACTTCGCCTTGCTGGA  500

seq1  GTCAAAGAGTGAACAAAAGATTCTTAGCCACATATGGTGCATGCTTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGAGTGAACAAAAGATTCTTAGCCACATATGGTGCATGCTTATAG  550

seq1  TTCCAGCTAACAGGTCGAGGGCTGGAGTTTAAGACGAAAGATAGGTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCTAACAGGTCGAGGGCTGGAGTTTAAGACGAAAGATAGGTGTCT  600

seq1  TCTCCAGAAAGAATAGTTACTCTGTTGTTGCCAGAGGTGAATTTTACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAAAGAATAGTTACTCTGTTGTTGCCAGAGGTGAATTTTACCCA  650

seq1  GGAACAAACAAAACCATGTAAAATGAACTTCTTGTCTTACTTCTTTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAACAAAACCATGTAAAATGAACTTCTTGTCTTACTTCTTTCACT  700

seq1  CAAAATGTCTGTGGATCCATTGTGCTTTCAGTGTGTTAGTTACTGTGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTCTGTGGATCCATTGTGCTTTCAGTGTGTTAGTTACTGTGCTA  750

seq1  ATATTCTATATAATGGCATATGACTATGGAACTATTAATTTTTTGAGC-T  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATATTCTATATAATGGCATATGACTATGGAACTATTAATTTTTTGAGCTT  800

seq1  TTTTTTTTTCTTACAGTTAATGACTTACAAATAAAACTTGTATACTTGGT  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTTTTTTTCTTACAGTTAATGAC-TACAAATAAAACTTGTATACTTGGT  849

seq1  CAATGAGATAACTTACTGGGTATGAGCACCTGCTGCCAAGTCTGACAACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGATAACTTACTGGGTATGAGCACCTGCTGCCAAGTCTGACAACT  899

seq1  TGAGGACAATTTTCCTGTACCTGTAGTCGTGAAAAGAATTCCTTCTTGCA  949
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  TGAGGACAATTTTCCTGTACCTGTAGTCGTGAAAAGAATTTCTTCTTGC-  948

seq1  AATGGACCTACACACACATGCACATCATGGCATGGATGCACCCCCCCCAC  999
      |||||| |||||||||||||||||||||||||||||||||    | ||||
seq2  AATGGA-CTACACACACATGCACATCATGGCATGGATGCA---GCTCCAC  994

seq1  ACACACACAAAAGGATAAATAAACAAGTCAATTCAAGGATGAT--CTGTC  1047
      ||||||||||||||||||   ||| ||||| ||||||||||||   ||||
seq2  ACACACACAAAAGGATAA--TAACCAGTCATTTCAAGGATGATTCTTGTC  1042

seq1  ACTGAGGCCCTTACTGTCTGGTAAT-AGCTGC-TATGTAAGAATGGCAAA  1095
      ||||||||||||||||||| ||||| |||||| | |  |||| || ||||
seq2  ACTGAGGCCCTTACTGTCTTGTAATAAGCTGCATTTTAAAGATTGCCAAA  1092

seq1  CACTCAACTC-ATTTGG--TTTTTTCTT--CTTCTAG-CATCAGTTCCTG  1139
      |||||||||| ||||||  |||||||||   || ||| |||||||||   
seq2  CACTCAACTCAATTTGGGTTTTTTTCTTTCTTTTTAGACATCAGTTCTGA  1142

seq1  AAGATTGCCAAGCCCCTCTCTAGCCTGACTCCA  1172
      |||| || |||| ||||| ||||||||| ||||
seq2  AAGAATGGCAAG-CCCTCCCTAGCCTGA-TCCA  1173