BAC Information

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BAC

Clone NameB6Ng01-162M08
ChromosomeY (Build37)14 (Build37)
Map Location 1,870,351 - 1,870,42349,856,693 - 49,857,861
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162M08.bB6Ng01-162M08.g
ACCDH955523DH955524
length4751,160
definitionDH955523|Mus musculus domesticus DNA, BAC clone: B6Ng01-162M08, 5' end.DH955524|Mus musculus domesticus DNA, BAC clone: B6Ng01-162M08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,351 - 1,870,423)(49,856,693 - 49,857,861)
sequence
gaattcacatgatatgtgctcactgttagcccagaaacttagaatagcca
agatataagatacaatttgcaaaacacatgaaactgaagaagaacgaaga
ccaaagtgtggacactttgccccttcttagaattggaaacaatcacccat
ggaaggagttacagagacaaaatttggagctgagacaaaaggatggacca
tctagagactgccatatccagggttccatcccattatcagcctccaaatg
ctgacaccattgcatacactagcaagattttgctgaaaggaccctgatag
agctgtctcttgtaagactatgccggggcctagcaaacacaaaagtggat
gctcacagtcagctattggatggatcacagggcccccaatggaggagcta
gggaaagtacccaaggagctaaaggggtcttcaaccttataggtggaaca
acaatatgaactaaccattacccct
gaattctttcagactgggctttttagtttttcgggtgttgagtaaccagt
ctggtcctcatccctgcacagcaagcaccttatccactgagccatcgccc
cagcccactgcccagccttccttctccacaaaagagtttggactctacaa
agttgagcatggaagacaaagcttgtctcctcacatcgacatgcagaggg
tgtctgcagagtttattcactcagggagacagagctgagctctttgcatc
caggaagtctctgaggtgagaacggtctgcctgccctagtctcagcagag
aagcatcctcagccgccttagtcataatcactggtgactattagacacat
ttcccatgcggtcggaccttggaacttaacctagtaaagaagccatgagc
ggtgactaagagaagctgtttgttccccccactcttagcatttcagggca
tgaagatgctagttctggatacagcagttgattgtgccagaatgctggag
ggagagaccaagagtgggggacccttccagacacctgtgggaagaagaat
ctatgacagccaggggcttggttaaatgggagaacagaaaagtttgtgtc
tcctctgcatgggtgagtcttaaggatgtgtctattcgtgagactgaatg
gctgtgtagccatcatttcttactgtatgcacgaggaaatgtaccatcat
atgtcgttctttggaagaccttataaattctaagggtcccattttagaaa
ggctgacgatttgtccaggtttgcccaactggaaagtggcatcactagga
ctcaagctcagatgtgtaccatatatcaaaccatgtttctcacctcatag
tttgcttcctggaaggctgattctcagaatgccctttgcatttcaaaaca
aagtctccaggcacttcaccggggctggagattttccaggcttgcgttat
gtcttgtagtagaaagttttcagaaattctccagagatgctgaagatttc
tttaaaggttgggttgtggaatgatcccacattgctactaatgactgaag
gacacatccaaggagatttaaaatgaattgttgtgaatggtgtggacact
gtattgaataactaatatttgggtcattaaaaaagtatctcttgccaggc
ttctgtttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870351_1870423
seq2: B6Ng01-162M08.b_449_521

seq1  GAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAAC  50
      |||||||||||||||||||||||| ||| ||||| |||||||||||||||
seq2  GAAAGTACCCAAGGAGCTAAAGGGGTCTTCAACCTTATAGGTGGAACAAC  50

seq1  ATTATGAACTAACCATTACCCCT  73
      | |||||||||||||||||||||
seq2  AATATGAACTAACCATTACCCCT  73

seq1: chr14_49856693_49857861
seq2: B6Ng01-162M08.g_68_1227

seq1  GAATTCTTTCAGACTGGGCTTTTTAGTTTTTCGGGTGTTGAGTAACCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGACTGGGCTTTTTAGTTTTTCGGGTGTTGAGTAACCAGT  50

seq1  CTGGTCCTCATCCCTGCACAGCAAGCACCTTATCCACTGAGCCATCGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCTCATCCCTGCACAGCAAGCACCTTATCCACTGAGCCATCGCCC  100

seq1  CAGCCCACTGCCCAGCCTTCCTTCTCCACAAAAGAGTTTGGACTCTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCACTGCCCAGCCTTCCTTCTCCACAAAAGAGTTTGGACTCTACAA  150

seq1  AGTTGAGCATGGAAGACAAAGCTTGTCTCCTCACATCGACATGCAGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGCATGGAAGACAAAGCTTGTCTCCTCACATCGACATGCAGAGGG  200

seq1  TGTCTGCAGAGTTTATTCACTCAGGGAGACAGAGCTGAGCTCTTTGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCAGAGTTTATTCACTCAGGGAGACAGAGCTGAGCTCTTTGCATC  250

seq1  CAGGAAGTCTCTGAGGTGAGAACGGTCTGCCTGCCCTAGTCTCAGCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTCTCTGAGGTGAGAACGGTCTGCCTGCCCTAGTCTCAGCAGAG  300

seq1  AAGCATCCTCAGCCGCCTTAGTCATAATCACTGGTGACTATTAGACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCCTCAGCCGCCTTAGTCATAATCACTGGTGACTATTAGACACAT  350

seq1  TTCCCATGCGGTCGGACCTTGGAACTTAACCTAGTAAAGAAGCCATGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATGCGGTCGGACCTTGGAACTTAACCTAGTAAAGAAGCCATGAGC  400

seq1  GGTGACTAAGAGAAGCTGTTTGTTCCCCCCACTCTTAGCATTTCAGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTAAGAGAAGCTGTTTGTTCCCCCCACTCTTAGCATTTCAGGGCA  450

seq1  TGAAGATGCTAGTTCTGGATACAGCAGTTGATTGTGCCAGAATGCTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGCTAGTTCTGGATACAGCAGTTGATTGTGCCAGAATGCTGGAG  500

seq1  GGAGAGACCAAGAGTGGGGGACCCTTCCAGACACCTGTGGGAAGAAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGACCAAGAGTGGGGGACCCTTCCAGACACCTGTGGGAAGAAGAAT  550

seq1  CTATGACAGCCAGGGGCTTGGTTAAATGGGAGAACAGAAAAGTTTGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACAGCCAGGGGCTTGGTTAAATGGGAGAACAGAAAAGTTTGTGTC  600

seq1  TCCTCTGCATGGGTGAGTCTTAAGGATGTGTCTATTCGTGAGACTGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCATGGGTGAGTCTTAAGGATGTGTCTATTCGTGAGACTGAATG  650

seq1  GCTGTGTAGCCATCATTTCTTACTGTATGCACGAGGAAATGTACCATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTAGCCATCATTTCTTACTGTATGCACGAGGAAATGTACCATCAT  700

seq1  ATGTCGTTCTTTGGAAGACCTTATAAATTCTAAGGGTCCCATTTTAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGTTCTTTGGAAGACCTTATAAATTCTAAGGGTCCCATTTTAGAAA  750

seq1  GGCTGACGATTTGTCCAGGTTTGCCCAACTGGAAAGTGGCATCACTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACGATTTGTCCAGGTTTGCCCAACTGGAAAGTGGCATCACTAGGA  800

seq1  CTCAAGCTCAGATGTGTACCATATATCAAACCATGTTCTTCACCTCATAG  850
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  CTCAAGCTCAGATGTGTACCATATATCAAACCATGTTTCTCACCTCATAG  850

seq1  TTTGCTTCCTGGAAGGCTGATTCTCAGAATGCCC-TTGCATTTCAAAACA  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTGCTTCCTGGAAGGCTGATTCTCAGAATGCCCTTTGCATTTCAAAACA  900

seq1  AAGTCTCCAGGCACTTCACCGGGGCTGGAGATTTTCCAGGCTTGCGTTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCCAGGCACTTCACCGGGGCTGGAGATTTTCCAGGCTTGCGTTAT  950

seq1  GTCTTGTAAGTAGAAAGTTTTCAGAACTCCCCCAGAGATGCTGAAGATTT  999
      ||||||| |||||||||||||||||| | | |||||||||||||||||||
seq2  GTCTTGT-AGTAGAAAGTTTTCAGAAATTCTCCAGAGATGCTGAAGATTT  999

seq1  CTTTAAAGGTTGGGGTGTGGAATGATCCCACATTGCTACTAATGACTGAA  1049
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGGTTGGGTTGTGGAATGATCCCACATTGCTACTAATGACTGAA  1049

seq1  GGAACCACATCCAAGGAGACTGTAGATGATCTG-TGTGTATAGTGTGGAC  1098
      |||  |||||||||||||| |  | ||||  || |||| || ||||||||
seq2  GGA--CACATCCAAGGAGATTTAAAATGAATTGTTGTGAATGGTGTGGAC  1097

seq1  ACTGAGTTGGAATAAACCAAAATATTTGGGTCATTTAAAAAAGTA-CTCT  1147
      ||||  || ||||||     ||||||||||||| ||||||||||| ||||
seq2  ACTGTATT-GAATAA---CTAATATTTGGGTCA-TTAAAAAAGTATCTCT  1142

seq1  TTGGGCCAGGCTTCTGGTTTGA  1169
      |   ||||||||||| ||||||
seq2  T---GCCAGGCTTCT-GTTTGA  1160