BAC Information

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BAC

Clone NameB6Ng01-165E13
ChromosomeY (Build37)2 (Build37)
Map Location 573,321 - 573,358171,495,825 - 171,496,176
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165E13.bB6Ng01-165E13.g
ACCDH957383DH957384
length500352
definitionDH957383|Mus musculus domesticus DNA, BAC clone: B6Ng01-165E13, 5' end.DH957384|Mus musculus domesticus DNA, BAC clone: B6Ng01-165E13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,358)(171,495,825 - 171,496,176)
sequence
gaattcatgaaattcctaggcaaatggttggacctggagggcatcatcct
gagtgaggtaacctaatcacaaaagaactcaaatgaaatgtactcactga
taagtagatattaatccagaaacttagtatatcgagatataaggtacaat
atgtaaaacatatgaaactgaagaagaacgaagaccaaagtgtggatact
ttgctcattcttagaattggaaacaatcacccatggaaggagttacagag
acaaagtttggacctgagacaaaaggatggtccatctagagactgccata
tccagggatccatcccataattagcctccaagcgatgacaccattgcata
cactagcaagcctttgttgcaaggacggtgatatagctgtcccttgtgag
actaggccagggatagaagtggatgctcacagtcaactattggatggatc
acagggcccccaatggaggagctagagaaagtatccaaggagctaaagag

ttatgtgtctcactcttgtctgtcgcttcactatctgctagagtgcttaa
ttttataaacacttggcgaagctatattcctattagtttacttctaataa
attatgttttatatataactaactccctgactagtgtaagttagaaaaag
aaaaaaaatagatggttcctgatggacctacttgggtgaatgggaaagga
gaagttcttaaaaatggtcttctgttcctaaatgtttgagggatggatgg
tgtgggaccaaaaagaaaatggagtggagagagagaataaaggaaataga
aagagtggaagaatgaggaaggaagagaaggtagaggaagaggagaggga
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573358
seq2: B6Ng01-165E13.b_509_546

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGG  38
      ||||||||||||||||||||| |||||||||||||| |
seq2  ATGGAGGAGCTAGAGAAAGTATCCAAGGAGCTAAAGAG  38

seq1: chr2_171495825_171496176
seq2: B6Ng01-165E13.g_77_428 (reverse)

seq1  CCTCCCTCTCCTCTTCCTCTACCTTCTCTTCCTTCCTCATTCTTCCACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCTCCTCTTCCTCTACCTTCTCTTCCTTCCTCATTCTTCCACTC  50

seq1  TTTCTATTTCCTTTATTCTCTCTCTCCACTCCATTTTCTTTTTGGTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTTCCTTTATTCTCTCTCTCCACTCCATTTTCTTTTTGGTCCCA  100

seq1  CACCATCCATCCCTCAAACATTTAGGAACAGAAGACCATTTTTAAGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCCATCCCTCAAACATTTAGGAACAGAAGACCATTTTTAAGAACT  150

seq1  TCTCCTTTCCCATTCACCCAAGTAGGTCCATCAGGAACCATCTATTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTCCCATTCACCCAAGTAGGTCCATCAGGAACCATCTATTTTTT  200

seq1  TTCTTTTTCTAACTTACACTAGTCAGGGAGTTAGTTATATATAAAACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCTAACTTACACTAGTCAGGGAGTTAGTTATATATAAAACATA  250

seq1  ATTTATTAGAAGTAAACTAATAGGAATATAGCTTCGCCAAGTGTTTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTAGAAGTAAACTAATAGGAATATAGCTTCGCCAAGTGTTTATAA  300

seq1  AATTAAGCACTCTAGCAGATAGTGAAGCGACAGACAAGAGTGAGACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGCACTCTAGCAGATAGTGAAGCGACAGACAAGAGTGAGACACAT  350

seq1  AA  352
      ||
seq2  AA  352