BAC Information

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BAC

Clone NameB6Ng01-165G05
ChromosomeY (Build37)
Map Location 1,120,576 - 1,121,018
singlet/doubletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165G05.bB6Ng01-165G05.g
ACCDH957457DH957458
length1,196867
definitionDH957457|Mus musculus domesticus DNA, BAC clone: B6Ng01-165G05, 5' end.DH957458|Mus musculus domesticus DNA, BAC clone: B6Ng01-165G05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttacgataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacatgccattgctgtt
ctgttcaggaatttttcccctgtgcccatgtcttcaaggcttttccccac
tttctcctctataagcttcagtgtctctggttttatgtgaagttccttga
tccacttagagttgaccttagtccaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtggtttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
cctgtagtaaagctttaggtctggcatggtaattccgccagaagttcttt
tatccttgagaagacttttttctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatgggtattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacttccttagttagagtcacgccaagatattttatattat
ttgtggactattgagaaggtgttgtttccctaatttcttttctcagcctg
ttaatctttgttattagaaagccatgacttgttttgagttattttatatt
ccagctacttcacccgaagctggttatcaggttaggaggtctcctgggga
aattttaggtccttaatatcatccataacaccgcaaaacggaatttactc
tctttccattgatcctgattccttttggtgcaatgtctggcaatct
gaattctcctgacaaaaggagattctccagatacttaaaagttacactca
cataagaattttttttctttttttttccattgtttattaggtatttagct
catttacatttccaacactataccaaaagtcccccatacccacccacccc
cactaccccacccacccactccccctttttggccctggcgttcccctgta
ctggggcatataaagtttgcatgtccaatgggcctctctttccagtgatg
gccgactaggccatcttttgatacatatgcagctagagtcaagagctccg
gggtactggttagttcataatgttgttccacctatagggttgcagatccc
tttagctccttgggttctttctctagctcctccattgggagccctgtgat
ccatccattagctgactgtgagcatccacttctgtgtttgctaggccccg
gcacagtctcacaagagatagctacatctgggtcctttcaataaaatctt
gctagggtatgcaatggtgtcagcgtttggatgctgattatggggtggat
ccctggatatggcagtctctacatggtccattctttcatttcagctccaa
actttgtctctgtaactccttccatgggtgttttgttccaaattctaagg
aggggcatagtgtccacacttcagtcttcattcttcttgagtttcatgtg
tttagcaaattgtaccttatatcttgggaatcctagtttggggctaatat
ccacttattcagtgagtacatattgtgtgagttcctttgtgaatgtgtta
cctcactcaggatgatgcccttccaggtccatccatttgcctaggaattt
cataaattcattctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120576_1121018
seq2: B6Ng01-165G05.g_128_569

seq1  TTTTTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTAC  50
       |||||||  |||||||||||||| ||||||||||||||| |||||||||
seq2  -TTTTTTTTCTTTTTTTTTCCATTGTTTATTAGGTATTTAGCTCATTTAC  49

seq1  ATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCC  100
      ||||||||  ||||||||||||||||||||| ||||||||||||||| ||
seq2  ATTTCCAACACTATACCAAAAGTCCCCCATACCCACCCACCCCCACTACC  99

seq1  CTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGC  150
      |  ||||||||||||||||||||||||||||  |||||||||||||||||
seq2  CCACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGC  149

seq1  ATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACT  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATATAAAGTTTGCATGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACT  199

seq1  AGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACT  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACT  249

seq1  GGTTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCT  300
      |||||| |||||| ||||||||||||||||||||| ||||||||||||||
seq2  GGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCT  299

seq1  CCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCA  350
      |||||| | ||||||||||||||||||||||||||||| |||||||||||
seq2  CCTTGGGTTCTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCA  349

seq1  TTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGT  400
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  TTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCACAGT  399

seq1  CTCACAAGAGACAGCTACATCTGCCTCCTTTCAATAAAATCTT  443
      ||||||||||| |||||||||||  ||||||||||||||||||
seq2  CTCACAAGAGATAGCTACATCTGGGTCCTTTCAATAAAATCTT  442