BAC Information

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BAC

Clone NameB6Ng01-165M21
ChromosomeY (Build37)15 (Build37)
Map Location 1,870,346 - 1,870,5144,704,182 - 4,705,218
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165M21.bB6Ng01-165M21.g
ACCDH957766DH957767
length4941,034
definitionDH957766|Mus musculus domesticus DNA, BAC clone: B6Ng01-165M21, 5' end.DH957767|Mus musculus domesticus DNA, BAC clone: B6Ng01-165M21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,514)(4,704,182 - 4,705,218)
sequence
tatagtttctccatccatagtaattgagagtttagctggatatagtaacc
tgggctggcatttgtgttctcttagtgtctgtagaacatctgtccagaag
tttggagctgtgacgaaaggatggaccatctagagactgccatatccagg
gatccaccccataatcagcttccaaacgctgacaccattgcatacactag
caagattttgctgaaaggacccagatgtagctgtctcttgtgagactatg
ccggggcctagcaaacacagaagtggatgctcacagtcacctattggatg
gatcacggggctcccaatggaagagctagagaaagtacccaaggagctaa
agggctctgcaaccctataggtggaacaacattatgaactaaccagtact
ctggagctcttgactttagctgcatatgtatcaaaagatggcctagtcgg
ccatcactggaaagagaggcccattggacacacaaattttatat
gaattcagtggacatagagcaaactttaaaatttatcttacttatatgga
agacattcctttttctagacattcttgacttctgacaaatgactccagag
gaaggctcattttttcctactctgtaatgagacatgcataaaggactgga
tatcctaaacccagccctattgactcagaaagatctgggagctcaacgtg
ggataaaattggagcttataatttttatcatttacaatgttgatagagat
atcagaagcacattacaataaagtaagagaacattgatagaaagtaaatt
ataaaatagcaatagcaacgttttaatagtattgtaataatagtcctata
ttgtgatatagttacatttaaaatgtattttgtttactaaatgattatca
ttagcattctataaactaaaaagtagtaagtgttttataaatattaaggg
atttaacgcttaatagatatatatttttgataaaattgtttatacttatt
tttacaaacaaagaaattgaggcagaaatattagcctgtttaaattcata
tattcaaaaaattgttagcaacttgaggaaaatttcattcacctcatata
gtcttccagtttcttagagactgtggtgcatattctctaagaaaagaagt
tttttttttttttttaatcaaacgtttggtaattttgcatttaccaaatt
tattatagatgataaaattgtctttattaagattacgctagactttttaa
aaatatagtcaatttctacatatacttgaccagttaactttgttttccat
agggcatatttcagttttaggaaatattcagaagttccatgtagtaggag
tgttctcctccaccctgcctcactcatgatgcacacgtccattctgatca
tgctcagtgctcacgtgggcatgcacatcctcaggaaaccatgcatcact
tatgttcgtgtgctctgtatctgtcgccctatagtgtagttagaaaaacg
tgggtgtctacattggcctcaccttttctcaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870514
seq2: B6Ng01-165M21.b_378_546

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGCTCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| ||| |  |||||||||||| | |||||||
seq2  ACAACATTATGAACTAACCAGTACTCTGGAGCTCTTGACTTTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATAT  169
      |||||  |||| |||||||
seq2  GGACACACAAATTTTATAT  169

seq1: chr15_4704182_4705218
seq2: B6Ng01-165M21.g_69_1102 (reverse)

seq1  CTCTGAG-AAAGGTGAAGCC-ATGTAGACA-CCACGTATTTTCTAAACTA  47
      || |||| |||||||| ||| ||||||||| |||||| |||||| |||| 
seq2  CTTTGAGAAAAGGTGAGGCCAATGTAGACACCCACGT-TTTTCT-AACT-  47

seq1  ACACTATAGGGCGACAGATAACAGAAGCACACGAACATAAGTGATGCATG  97
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  ACACTATAGGGCGACAGAT-ACAG-AGCACACGAACATAAGTGATGCATG  95

seq1  GTTTTCCTGAGGATGTGCATGCCCACGTGAGCACCTGAGCATGATCAGAA  147
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  G-TTTCCTGAGGATGTGCATGCCCACGTGAGCA-CTGAGCATGATCAGAA  143

seq1  TGGACGTGTGCATCATGAGTGAGGCAGGGTGGAGGAGAACACTCCTACTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGTGTGCATCATGAGTGAGGCAGGGTGGAGGAGAACACTCCTACTA  193

seq1  CATGGAACTTCTGAATATTTCCTAAAACTGAAATATG-CCTATGGAAAAC  246
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATGGAACTTCTGAATATTTCCTAAAACTGAAATATGCCCTATGGAAAAC  243

seq1  AAAGTTAACTGGTCAAGTATATGTAGAAATTGACTATATTTTTAAAAAGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAACTGGTCAAGTATATGTAGAAATTGACTATATTTTTAAAAAGT  293

seq1  CTAGCGTAATCTTAATAAAGACAATTTTATCATCTATAATAAATTTGGTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGTAATCTTAATAAAGACAATTTTATCATCTATAATAAATTTGGTA  343

seq1  AATGCAAAATTACCAAACGTTTGATTAAAAAAAAAAAAAAAACTTCTTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAAATTACCAAACGTTTGATTAAAAAAAAAAAAAAAACTTCTTTT  393

seq1  CTTAGAGAATATGCACCACAGTCTCTAAGAAACTGGAAGACTATATGAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGAATATGCACCACAGTCTCTAAGAAACTGGAAGACTATATGAGG  443

seq1  TGAATGAAATTTTCCTCAAGTTGCTAACAATTTTTTGAATATATGAATTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAAATTTTCCTCAAGTTGCTAACAATTTTTTGAATATATGAATTT  493

seq1  AAACAGGCTAATATTTCTGCCTCAATTTCTTTGTTTGTAAAAATAAGTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGCTAATATTTCTGCCTCAATTTCTTTGTTTGTAAAAATAAGTAT  543

seq1  AAACAATTTTATCAAAAATATATATCTATTAAGCGTTAAATCCCTTAATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTTTATCAAAAATATATATCTATTAAGCGTTAAATCCCTTAATA  593

seq1  TTTATAAAACACTTACTACTTTTTAGTTTATAGAATGCTAATGATAATCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAACACTTACTACTTTTTAGTTTATAGAATGCTAATGATAATCA  643

seq1  TTTAGTAAACAAAATACATTTTAAATGTAACTATATCACAATATAGGACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAAACAAAATACATTTTAAATGTAACTATATCACAATATAGGACT  693

seq1  ATTATTACAATACTATTAAAACGTTGCTATTGCTATTTTATAATTTACTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTACAATACTATTAAAACGTTGCTATTGCTATTTTATAATTTACTT  743

seq1  TCTATCAATGTTCTCTTACTTTATTGTAATGTGCTTCTGATATCTCTATC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAATGTTCTCTTACTTTATTGTAATGTGCTTCTGATATCTCTATC  793

seq1  AACATTGTAAATGATAAAAATTATAAGCTCCAATTTTATCCCACGTTGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGTAAATGATAAAAATTATAAGCTCCAATTTTATCCCACGTTGAG  843

seq1  CTCCCAGATCTTTCTGAGTCAATAGGGCTGGGTTTAGGATATCCAGTCCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGATCTTTCTGAGTCAATAGGGCTGGGTTTAGGATATCCAGTCCT  893

seq1  TTATGCATGTCTCATTACAGAGTAGGAAAAAATGAGCCTTCCTCTGGAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCATGTCTCATTACAGAGTAGGAAAAAATGAGCCTTCCTCTGGAGT  943

seq1  CATTTGTCAGAAGTCAAGAATGTCTAGAAAAAGGAATGTCTTCCATATAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCAGAAGTCAAGAATGTCTAGAAAAAGGAATGTCTTCCATATAA  993

seq1  GTAAGATAAATTTTAAAGTTTGCTCTATGTCCACTGAATTC  1037
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATAAATTTTAAAGTTTGCTCTATGTCCACTGAATTC  1034