BAC Information

Click to search

BAC

Clone NameB6Ng01-167L12
Chromosome6 (Build37)Y (Build37)
Map Location 66,490,174 - 66,491,2472,430,625 - 2,430,701
singlet/doubletsingletsinglet
Overlap geneMad2l1
Upstream gene9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916, Tpm3-rs3, LOC627751
Downstream geneV1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167L12.bB6Ng01-167L12.g
ACCDH959139DH959140
length1,073947
definitionDH959139|Mus musculus domesticus DNA, BAC clone: B6Ng01-167L12, 5' end.DH959140|Mus musculus domesticus DNA, BAC clone: B6Ng01-167L12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,490,174 - 66,491,247)(2,430,625 - 2,430,701)
sequence
gaattcctttaaaaatggtcattgtacatagaaaaacttctgttaaaacg
ctaactacttcccttaacattgtaactggaccaggatataaagaagcgtt
taaatgtaaacacagcagaagggatcaaagcttttttagttctgagggtc
agtcaggaatgttgccaatccggatccagtgagagaggcagggaggacag
ctttactattcaaaagttctgtactttactctcattcccaacttaggttc
gtttggtctgctgatttacactgacaaagatttggtggtgcctgaaacga
gggaagaatcaggaccccagtttattaccagttctgaagaaatccgtcta
cactgatttacaaccacaagccacaaagggaatagtattgtggcctacaa
aaccccatcaatgaagagacggtacacataccatcccccatcacattata
ccttctgctgtatttatatttagatgcttctttatatcttggtcaagatt
cttctgagcaaaatcattagacaaagtatttagctttttaaaagaagttt
ttctacctacagtgaccattgttaaaggaatccatcccacagtgaatctg
ttggctcccttaataacgtgtagcactcttgctgattctgtggtaagttc
aggaagaacccacgaaatgcagcagtaagacacatttctctttatataga
ccccatattgaaatacatgctaattatttgattttgttgtatatatcttg
agctcacaaagcagttgatgctgtttaatttctgtaataaagaactctta
ttttaatgttttataaaaatcaagctttaaaagtcagtgatacaaaaaaa
ttaagccttgtgttttaaatttgtgttacagtatctttgatatttagttt
ggtgctaatatagtcagatacttcagtggattgagtggatggattgtgtt
cattttgatatgtgatggggatggttttgtgcactggaaattcagatgct
gatgctgtgcctcgaaagatctgtggaatctggatattggccagttggca
gtcttgttatactagtagtccag
gaattcattaaaaaatcagaaagagtacaagtaaatgataaaactcaaaa
atttggaaaagcaaacatagactaaaaccaaatctagttgacagtcacaa
ataataaatattagagtagaatttaattaatcataacagggaaaacaata
aaaagaatcagtacatccaaaagatggctctttgcaaaaataataaagat
tgagaaacccctggcccaactaaccaaaagaaataaagaaagaaacaaag
aaagaaagagataaagaaaggaagaaacagagaaagaaagaaagagagag
agagagagagagagagagagagagagagagagagagagagagaaagagag
gaagagagaaagagagagagaaagtacccgaatttaaagactcagaaatg
aacagggaaacattgccacaaaggccaaagtaattcataatattataaag
taatactttggaggccgttgccagaacatctgcatgagacatcttggttc
ccggatcctgccaagactagtctgcacaggtgagagtgtggactacagaa
gctaacagcttctgggtcaggcaggagccacagagcttctaaagcaggcc
caatttctggctccagacatctggcaccttccttgccagagaagaggtgt
ccaccccgcccgggaaagttttgatggagcatccgcgagaaccatcttcc
ttcctggatcccaccaagactagtctgcacaggtgagagtgtggactaca
gaagctcacagcttctgggacagaccctgtttcagccttcatcttctgcc
aggaggcaaatccgaacaacagatatctgtgcaccttctctgcaagagga
aagcttgcctgcagagagtgctctaaccactgaaactcaggagagagcta
gtctcccaggtctgctggtagaggctaacagaatcacgaaaggaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_66490174_66491247
seq2: B6Ng01-167L12.b_46_1118

seq1  GAATTCCTTTAAAAATGGTCATTGTACATAGAAAAACTTCTGTTAAAACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAAAAATGGTCATTGTACATAGAAAAACTTCTGTTAAAACG  50

seq1  CTAACTACTTCCCTTAACATTGTAACTGGACCAGGATATAAAGAAGCGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTACTTCCCTTAACATTGTAACTGGACCAGGATATAAAGAAGCGTT  100

seq1  TAAATGTAAACACAGCAGAAGGGATCAAAGCTTTTTTAGTTCTGAGGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTAAACACAGCAGAAGGGATCAAAGCTTTTTTAGTTCTGAGGGTC  150

seq1  AGTCAGGAATGTTGCCAATCCGGATCCAGTGAGAGAGGCAGGGAGGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGAATGTTGCCAATCCGGATCCAGTGAGAGAGGCAGGGAGGACAG  200

seq1  CTTTACTATTCAAAAGTTCTGTACTTTACTCTCATTCCCAACTTAGGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTATTCAAAAGTTCTGTACTTTACTCTCATTCCCAACTTAGGTTC  250

seq1  GTTTGGTCTGCTGATTTACACTGACAAAGATTTGGTGGTGCCTGAAACGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTCTGCTGATTTACACTGACAAAGATTTGGTGGTGCCTGAAACGA  300

seq1  GGGAAGAATCAGGACCCCAGTTTATTACCAGTTCTGAAGAAATCCGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAATCAGGACCCCAGTTTATTACCAGTTCTGAAGAAATCCGTCTA  350

seq1  CACTGATTTACAACCACAAGCCACAAAGGGAATAGTATTGTGGCCTACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATTTACAACCACAAGCCACAAAGGGAATAGTATTGTGGCCTACAA  400

seq1  AACCCCATCAATGAAGAGACGGTACACATACCATCCCCCATCACATTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCATCAATGAAGAGACGGTACACATACCATCCCCCATCACATTATA  450

seq1  CCTTCTGCTGTATTTATATTTAGATGCTTCTTTATATCTTGGTCAAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGCTGTATTTATATTTAGATGCTTCTTTATATCTTGGTCAAGATT  500

seq1  CTTCTGAGCAAAATCATTAGACAAAGTATTTAGCTTTTTAAAAGAAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGCAAAATCATTAGACAAAGTATTTAGCTTTTTAAAAGAAGTTT  550

seq1  TTCTACCTACAGTGACCATTGTTAAAGGAATCCATCCCACAGTGAATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTACAGTGACCATTGTTAAAGGAATCCATCCCACAGTGAATCTG  600

seq1  TTGGCTCCCTTAATAACGTGTAGCACTCTTGCTGATTCTGTGGTAAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCCCTTAATAACGTGTAGCACTCTTGCTGATTCTGTGGTAAGTTC  650

seq1  AGGAAGAACCCACGAAATGCAGCAGTAAGACACATTTCTCTTTATATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAACCCACGAAATGCAGCAGTAAGACACATTTCTCTTTATATAGA  700

seq1  CCCCATATTGAAATACATGCTAATTATTTGATTTTGTTGTATATATCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATATTGAAATACATGCTAATTATTTGATTTTGTTGTATATATCTTG  750

seq1  AGCTCACAAAGCAGTTGATGCTGTTTAATTTCTGTAATAAAGAACTCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACAAAGCAGTTGATGCTGTTTAATTTCTGTAATAAAGAACTCTTA  800

seq1  TTTTAATGTTTTATAAAAATCAAGCTTTAAAAGTCAGTGATACAAAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGTTTTATAAAAATCAAGCTTTAAAAGTCAGTGATACAAAAAAA  850

seq1  TTAAGCCTTGTGTTTTAAATTTGTGTTACAGTATCTTTGATATTTAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCTTGTGTTTTAAATTTGTGTTACAGTATCTTTGATATTTAGTTT  900

seq1  GGTGCTAATATAGTCAGATACTTCAGTGGATTGAGTGGATGGATTGTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTAATATAGTCAGATACTTCAGTGGATTGAGTGGATGGATTGTGTT  950

seq1  CATTTTGATTATGTGATGGGGATGGTTTTGTGCACTGGAAATTCAGATGC  1000
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGA-TATGTGATGGGGATGGTTTTGTGCACTGGAAATTCAGATGC  999

seq1  TGATTGCTGTG-CTC-AGAGATCTTGTTGTAATCTGGATATTGG-CAGTT  1047
      ||| ||||||| ||| | ||||||   || |||||||||||||| |||||
seq2  TGA-TGCTGTGCCTCGAAAGATCT--GTGGAATCTGGATATTGGCCAGTT  1046

seq1  -GCAGTCCTTGTTATAATAGTAGGCCAG  1074
       ||||| ||||||||| |||||| ||||
seq2  GGCAGT-CTTGTTATACTAGTAGTCCAG  1073

seq1: chrY_2430625_2430701
seq2: B6Ng01-167L12.g_344_408 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50

seq1  TTTCTCCCTCTCTCTCTCTCTTTCTCT  77
      |||||  || |||||            
seq2  TTTCTTTCTTTCTCT------------  65