BAC Information

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BAC

Clone NameB6Ng01-194D10
ChromosomeY (Build37)
Map Location 1,114,448 - 1,258,443
singlet/doubletdoublet
Overlap geneEG667079
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194D10.bB6Ng01-194D10.g
ACCGA016969GA016970
length957844
definitionB6Ng01-194D10.b B6Ng01-194D10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(1,114,448 - 1,115,176)(1,257,603 - 1,258,443)
sequence
gaattcatttccatggtatcatgtgccataagaggtagcaaggagcttac
aataagtagatttaagtgcaaatgccaactgaaaacttttcactgtcatg
gatttgaatggtttctggccttcattctccctttcacctgttgagatttt
tgcacacttcttagttgtcactgacagaagcctgagcagcaacttgcctt
ccctatttgctgtgagtgttgattgaaaaaaattaaaaaattgactttta
aaaacaaaacaagggcagttacatcctccaaggtcaccaaaggcacatct
tgcttttgctttatttgttctaaattttttacaccaaactgatgttaaag
gtcagtctgcagcgaatcaccactggcacccagttacttctagttcttat
gccatggtcaagtggcaggacccattaactaaagaatggaagggtccaga
tctggtcctaatctggggaaggggttcggtctgtgttttttcacaaaaag
aagacggagtgtgatggctgcctgagagattagttcatcaactggacaca
gatcctgaatcttctagtaagtatgactctaaccttgattatgactaaaa
atcctctttagccgaaaacttaatttcaagcacagcctccactcccagag
aagctgcagcctttctgcaattctcaaagtcacctcccctacaccaggag
ctctaagtctaagcctgatcatgggtaatttgcaattgaaaggagtacct
ggactttcccaaagaagcttttgtactgtcattttcactgtcttgacttt
gtttttcaaacaggtcagttcaacccccttcagcctgactgcagcaggca
tgcatccccacatccaacagcacaggtggcagttattaatattcagtcaa
gaagcattctagtacatatcgtggcttttgggtctgattgggaataaagg
tttgcta
gaattctttgcaaggagtaaggaaaatttgcacttgggcccaaggttaca
aagttgagataaacttaaacatgatatcaaccagtaatattttaaatatc
tttaaaatttccttctgattacaaggaattcgtagattaaatgcagtaaa
agaggataggatagatgaggttattttacttttgaaatatgggtaatact
ggacataggtatgtatggaatttacttacaaattagagggcactttaatt
tttcatgctacatagttcttcagttcttcattaaaaaggtccttttctgt
cccctccacaatctccaccacactctatacatcctcttcgtaggggatga
cactaccctttgtgggctagaccgttccacatcagccatcaaaaaaagat
cattccttacagatgtgtccacaggccaatgtattggaggcagttcttca
tctgaggttctttcttcacaggatgatttaatttgacaaaaaattctaac
aaggaccactacacatccatatcatcaataatgtttgcctcactgtgtga
aatatacaagccatggagtaactttagatatttaaccactggcttaaaaa
ttgagagagatatattaatgtatttctcatctatgtgtaatagtgaaggg
tttgttttcagaaaaaaaaatggatggaactgtaaaatacaatatgttag
gtgaaacaagccaaaccaaaaagacaattggaaattagaattttactaaa
gggacatttaaaaaaaaaaggaggtattttaggaagagtaagtgcagcag
caggaggggtgagtagatggaaatggaagatagtgtgggaggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1114448_1115176
seq2: B6Ng01-194D10.b_45_773

seq1  GAATTCATTTCCATGGTATCATGTGCCATAAGAGGTAGCAAGGAGCTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCATGGTATCATGTGCCATAAGAGGTAGCAAGGAGCTTAC  50

seq1  AATAAGTAGATTTAAGTGCAAATGCCAACTGAAAACTTTTCACTGTCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTAGATTTAAGTGCAAATGCCAACTGAAAACTTTTCACTGTCATG  100

seq1  GATTTGAATGGTTTCTGGCCTTCATTCTCCCTTTCACCTGTTGAGATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAATGGTTTCTGGCCTTCATTCTCCCTTTCACCTGTTGAGATTTT  150

seq1  TGCACACTTCTTAGTTGTCACTGACAGAAGCCTGAGCAGCAACTTGCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACTTCTTAGTTGTCACTGACAGAAGCCTGAGCAGCAACTTGCCTT  200

seq1  CCCTATTTGCTGTGAGTGTTGATTGAAAAAAATTAAAAAATTGACTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTTGCTGTGAGTGTTGATTGAAAAAAATTAAAAAATTGACTTTTA  250

seq1  AAAACAAAACAAGGGCAGTTACATCCTCCAAGGTCACCAAAGGCACATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAGGGCAGTTACATCCTCCAAGGTCACCAAAGGCACATCT  300

seq1  TGCTTTTGCTTTATTTGTTCTAAATTTTTTACACCAAACTGATGTTAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTGCTTTATTTGTTCTAAATTTTTTACACCAAACTGATGTTAAAG  350

seq1  GTCAGTCTGCAGCGAATCACCACTGGCACCCAGTTACTTCTAGTTCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCTGCAGCGAATCACCACTGGCACCCAGTTACTTCTAGTTCTTAT  400

seq1  GCCATGGTCAAGTGGCAGGACCCATTAACTAAAGAATGGAAGGGTCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGTCAAGTGGCAGGACCCATTAACTAAAGAATGGAAGGGTCCAGA  450

seq1  TCTGGTCCTAATCTGGGGAAGGGGTTCGGTCTGTGTTTTTTCACAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCCTAATCTGGGGAAGGGGTTCGGTCTGTGTTTTTTCACAAAAAG  500

seq1  AAGACGGAGTGTGATGGCTGCCTGAGAGATTAGTTCATCAACTGGACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGGAGTGTGATGGCTGCCTGAGAGATTAGTTCATCAACTGGACACA  550

seq1  GATCCTGAATCTTCTAGTAAGTATGACTCTAACCTTGATTATGACTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGAATCTTCTAGTAAGTATGACTCTAACCTTGATTATGACTAAAA  600

seq1  ATCCTCTTTAGCCGAAAACTTAATTTCAAGCACAGCCTCCACTCCCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTTTAGCCGAAAACTTAATTTCAAGCACAGCCTCCACTCCCAGAG  650

seq1  AAGCTGCAGCCTTTCTGCAATTCTCAAAGTCACCTCCCCTACACCAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCAGCCTTTCTGCAATTCTCAAAGTCACCTCCCCTACACCAGGAG  700

seq1  CTCTAAGTCTAAGCCTGATCATGGGTAAT  729
      |||||||||||||||||||||||||||||
seq2  CTCTAAGTCTAAGCCTGATCATGGGTAAT  729

seq1: chrY_1257603_1258443
seq2: B6Ng01-194D10.g_72_915 (reverse)

seq1  ATCCT-CCACACTATCTTCCATTTCCATCTACTCACCCCTCCTGCTGCTG  49
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCCACACTATCTTCCATTTCCATCTACTCACCCCTCCTGCTGCTG  50

seq1  CACTTACTCTTCCT-AAATACCTCCTTTTTTTTTTAAATGTCCC-TTAGT  97
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  CACTTACTCTTCCTAAAATACCTCCTTTTTTTTTTAAATGTCCCTTTAGT  100

seq1  AAAATTCTAATTTCCAATTGTCTTTTTGGTTTGGCTTGTTTCACCTAACA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTAATTTCCAATTGTCTTTTTGGTTTGGCTTGTTTCACCTAACA  150

seq1  TATTGTATTTTACAGTTCCATCCATTTTTTTTTCTGAAAACAAACCCTTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATTTTACAGTTCCATCCATTTTTTTTTCTGAAAACAAACCCTTC  200

seq1  ACTATTACACATAGATGAGAAATACATTAATATATCTCTCTCAATTTTTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTACACATAGATGAGAAATACATTAATATATCTCTCTCAATTTTTA  250

seq1  AGCCAGTGGTTAAATATCTAAAGTTACTCCATGGCTTGTATATTTCACAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTGGTTAAATATCTAAAGTTACTCCATGGCTTGTATATTTCACAC  300

seq1  AGTGAGGCAAACATTATTGATGATATGGATGTGTAGTGGTCCTTGTTAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGCAAACATTATTGATGATATGGATGTGTAGTGGTCCTTGTTAGA  350

seq1  ATTTTTTGTCAAATTAAATCATCCTGTGAAGAAAGAACCTCAGATGAAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGTCAAATTAAATCATCCTGTGAAGAAAGAACCTCAGATGAAGA  400

seq1  ACTGCCTCCAATACATTGGCCTGTGGACACATCTGTAAGGAATGATCTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTCCAATACATTGGCCTGTGGACACATCTGTAAGGAATGATCTTT  450

seq1  TTTTGATGGCTGATGTGGAACGGTCTAGCCCACAAAGGGTAGTGTCATCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATGGCTGATGTGGAACGGTCTAGCCCACAAAGGGTAGTGTCATCC  500

seq1  CCTACGAAGAGGATGTATAGAGTGTGGTGGAGATTGTGGAGGGGACAGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACGAAGAGGATGTATAGAGTGTGGTGGAGATTGTGGAGGGGACAGAA  550

seq1  AAGGACCTTTTTAATGAAGAACTGAAGAACTATGTAGCATGAAAAATTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCTTTTTAATGAAGAACTGAAGAACTATGTAGCATGAAAAATTAA  600

seq1  AGTGCCCTCTAATTTGTAAGTAAATTCCATACATACCTATGTCCAGTATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCCTCTAATTTGTAAGTAAATTCCATACATACCTATGTCCAGTATT  650

seq1  ACCCATATTTCAAAAGTAAAATAACCTCATCTATCCTATCCTCTTTTACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATATTTCAAAAGTAAAATAACCTCATCTATCCTATCCTCTTTTACT  700

seq1  GCATTTAATCTACGAATTCCTTGTAATCAGAAGGAAATTTTAAAGATATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAATCTACGAATTCCTTGTAATCAGAAGGAAATTTTAAAGATATT  750

seq1  TAAAATATTACTGGTTGATATCATGTTTAAGTTTATCTCAACTTTGTAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTACTGGTTGATATCATGTTTAAGTTTATCTCAACTTTGTAAC  800

seq1  CTTGGGCCCAAGTGCAAATTTTCCTTACTCCTTGCAAAGAATTC  841
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCCCAAGTGCAAATTTTCCTTACTCCTTGCAAAGAATTC  844