BAC Information

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BAC

Clone NameB6Ng01-200N17
ChromosomeY (Build37)
Map Location 2,028,598 - 2,086,672
singlet/doubletdoublet
Overlap geneLOC100042849, LOC620228, LOC667181, Rbmy1a1
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840
Downstream geneLOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200N17.bB6Ng01-200N17.g
ACCGA021799GA021800
length1,0911,122
definitionB6Ng01-200N17.b B6Ng01-200N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(2,028,598 - 2,029,690)(2,085,573 - 2,086,672)
sequence
gaattcataagatgtcctgctatgaggagcaacagtcatatgggggtcct
gttacctgggtaactgtagagaactagggagttggtctgtcctcgctgcc
ttgagaggtatatgttaaaggtttttcacgttaaaacaggcagtgttgaa
gaagtagcatttgtctgtagaatgtggtgatttgagtatgcttgtcccag
ggaatggtgctactaggaggtgctattacagcctagttggagtaggtgta
gccttgttgaaggaaatgtgtcactgtatgagtgggctttgagaccctcc
tcctagctgtctgaaaaacaatagtcttcttccttcctttggatcaagat
gtagaactctctgttccttccactcccatctaaaagcactgacgtgcttc
ctaccttgatgatggtctgaacctgtaagccagtgccaactaaatgcttt
tctttataagtgttaccttggtcgtggtgtctgttcacagcaaaggaaaa
cctaagacagagaagttctacgaactttgttgctggaggaaggaggtaag
agggaagtcatcagttgataaaattcctggaatttattagagaacttcag
tcatctttccctcaaaagaagttggtccttgttagaaaaccaaaaaacaa
acaaacaaacaaaccaaaacaattcagagaatatttgatgcaaaggggcc
agaggaaattcctagtgatgcttttcagttttgcaaagaaaggaaacaat
actagatttgacacagttaaaactaaaactgaaccaagaggtagtggtgc
atgcctttaatcccggcactcaggaggcacaggcaggaggatttctgagt
ttgaggccaacctggtcttcagagtgagttccaggacatccagagctata
tatacagagaaaccctctctcaatccaccaccaccccaaaataagaaagt
aaaaaccaataaaaatataaataagatcagggaaaagccaggactacact
ggcaataaaatccaaattagaaactacagatagagtatttactgcctctc
ttgtgacaggtggaggattttttgggtttgttttttccttc
gaattcattaccttttcttgattttctattttctcagctttaatggatca
caccgtcctgcaacaactccgactccaaaatgaccactcgcgcccaagtc
gcaaccaatttaagtaggcggagagaccctgatgtcaccaaccgcaaagg
aagtagggatgatgtggaggattgaaccaagagactggctggttgagggg
tgggcgtagtgtggtattgggcttcagagtcagaaatggacacagtactt
gataagtatgaacaaagcagataaaaattaattgaatagcagataagaat
tggtgaatggagggagttgttagggcagctacctgcagaggcctcctatt
gcaagtccatgcccccattacacccgagatagcagttaccagttttagac
cacagctctgagcccgggatatagcaagcacatcgctgttgtccatttaa
aacatttaaaagaccaacatatgtttactaatttgcatgattccccccct
attttcttttcttacctagcgaataaaaaccattctggtgctggttaaat
ggctcagctggtaagagcactgactggtcttctgaaggtcctgagttcaa
ttcccagcaaccctgtgcgtacgtgaggcctcacaaccatctgtacagct
acagtgtactcatatacatgaaacacggtaaattaatcttttatttaaaa
gccattataaaatttctactacttatcgtccacccaaaatattgataaaa
tactgggcgggccacattgtgtagaattgagttttccaacattataaaag
gaaaaaatatatatacatggatgattcgtacaaaatactaaaaaataaaa
acggagaaaaaatttaaagattacaaattgaaagctgatcgtttctgggg
actagagaaggccatggaaaaaagcttcaggtggaaaaaaaggttttgct
ctaataatgtaaagaacttggatttcagattcccaacctacaacttgtta
gaaagtcagggagtttaggtatgaagttaagaagaagggaatctcagggc
cttgttaaaccagtccattgttacaaatcagttaatcttgaaggttaggt
gaaagacttatctgaaaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2028598_2029690
seq2: B6Ng01-200N17.b_45_1135

seq1  GAATTCATAAGATGTCCTGCTATGAGGAGCAACAGTCATATGGGGGTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGATGTCCTGCTATGAGGAGCAACAGTCATATGGGGGTCCT  50

seq1  GTTACCTGGGTAACTGTAGAGAACTAGGGAGTTGGTCTGTCCTCGCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTGGGTAACTGTAGAGAACTAGGGAGTTGGTCTGTCCTCGCTGCC  100

seq1  TTGAGAGGTATATGTTAAAGGTTTTTCACGTTAAAACAGGCAGTGTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGGTATATGTTAAAGGTTTTTCACGTTAAAACAGGCAGTGTTGAA  150

seq1  GAAGTAGCATTTGTCTGTAGAATGTGGTGATTTGAGTATGCTTGTCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGCATTTGTCTGTAGAATGTGGTGATTTGAGTATGCTTGTCCCAG  200

seq1  GGAATGGTGCTACTAGGAGGTGCTATTACAGCCTAGTTGGAGTAGGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGTGCTACTAGGAGGTGCTATTACAGCCTAGTTGGAGTAGGTGTA  250

seq1  GCCTTGTTGAAGGAAATGTGTCACTGTATGAGTGGGCTTTGAGACCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTGAAGGAAATGTGTCACTGTATGAGTGGGCTTTGAGACCCTCC  300

seq1  TCCTAGCTGTCTGAAAAACAATAGTCTTCTTCCTTCCTTTGGATCAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCTGTCTGAAAAACAATAGTCTTCTTCCTTCCTTTGGATCAAGAT  350

seq1  GTAGAACTCTCTGTTCCTTCCACTCCCATCTAAAAGCACTGACGTGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACTCTCTGTTCCTTCCACTCCCATCTAAAAGCACTGACGTGCTTC  400

seq1  CTACCTTGATGATGGTCTGAACCTGTAAGCCAGTGCCAACTAAATGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTGATGATGGTCTGAACCTGTAAGCCAGTGCCAACTAAATGCTTT  450

seq1  TCTTTATAAGTGTTACCTTGGTCGTGGTGTCTGTTCACAGCAAAGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATAAGTGTTACCTTGGTCGTGGTGTCTGTTCACAGCAAAGGAAAA  500

seq1  CCTAAGACAGAGAAGTTCTACGAACTTTGTTGCTGGAGGAAGGAGGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGACAGAGAAGTTCTACGAACTTTGTTGCTGGAGGAAGGAGGTAAG  550

seq1  AGGGAAGTCATCAGTTGATAAAATTCCTGGAATTTATTAGAGAACTTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTCATCAGTTGATAAAATTCCTGGAATTTATTAGAGAACTTCAG  600

seq1  TCATCTTTCCCTCAAAAGAAGTTGGTCCTTGTTAGAAAACCAAAAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTCCCTCAAAAGAAGTTGGTCCTTGTTAGAAAACCAAAAAACAA  650

seq1  ACAAACAAACAAACCAAAACAATTCAGAGAATATTTGATGCAAAGGGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACCAAAACAATTCAGAGAATATTTGATGCAAAGGGGCC  700

seq1  AGAGGAAATTCCTAGTGATGCTTTTCAGTTTTGCAAAGAAAGGAAACAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAATTCCTAGTGATGCTTTTCAGTTTTGCAAAGAAAGGAAACAAT  750

seq1  ACTAGATTTGACACAGTTAAAACTAAAACTGAACCAAGAGGTAGTGGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATTTGACACAGTTAAAACTAAAACTGAACCAAGAGGTAGTGGTGC  800

seq1  ATGCCTTTAATCCCGGCACTCAGGAGGCACAGGCAGGAGGATTTCTGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTAATCCCGGCACTCAGGAGGCACAGGCAGGAGGATTTCTGAGT  850

seq1  TTGAGGCCAACCTGGTCTTCAGAGTGAGTTCCAAGACATCCAGAGCTATA  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTGAGGCCAACCTGGTCTTCAGAGTGAGTTCCAGGACATCCAGAGCTATA  900

seq1  TATACAGAGAAACCCTCTCTCAATCCACCACCACCCCAAAATAAGAAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGAGAAACCCTCTCTCAATCCACCACCACCCCAAAATAAGAAAGT  950

seq1  AAAAACAAATAAAAATATAAATAAGATCAGGAAAAAG-CAAGACTAACAC  999
      |||||| |||||||||||||||||||||||| ||||| || |||| ||||
seq2  AAAAACCAATAAAAATATAAATAAGATCAGGGAAAAGCCAGGACT-ACAC  999

seq1  TGGCAATAAAATCCAAATTAGAAACTACAGATAGAGTATTTACTGCCTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATAAAATCCAAATTAGAAACTACAGATAGAGTATTTACTGCCTCT  1049

seq1  C-TGTGACAAGGTGGAGGATTTTTTGGTTTTTGTTTTTTTCCTTC  1093
      | |||||| |||||||||||||||||| |||   |||||||||||
seq2  CTTGTGAC-AGGTGGAGGATTTTTTGGGTTT--GTTTTTTCCTTC  1091

seq1: chrY_2085573_2086672
seq2: B6Ng01-200N17.g_66_1187 (reverse)

seq1  TTTATTTTCAGAT-AGTCTTTCA-CTAACCTTC-AGATT-ACTGATTTGG  46
      ||||||||||||| ||||||||| ||||||||| ||||| |||||||| |
seq2  TTTATTTTCAGATAAGTCTTTCACCTAACCTTCAAGATTAACTGATTT-G  49

seq1  TAAC-ATGGACTGG-TTAACAA-GCCCTGAGATT-CCTTC-TCTTAACT-  90
      |||| ||||||||| ||||||| ||||||||||| ||||| |||||||| 
seq2  TAACAATGGACTGGTTTAACAAGGCCCTGAGATTCCCTTCTTCTTAACTT  99

seq1  -CTACCT-AACT-CCTGACTTTCTA--CAGTTGTA-GTTGGG-ATCTGAA  133
        ||||| |||| ||||||||||||   ||||||| |||||| |||||||
seq2  CATACCTAAACTCCCTGACTTTCTAACAAGTTGTAGGTTGGGAATCTGAA  149

seq1  AT-CAAGTTC-TTACATTA-TAGAGCAAA--CCTTTTATCCA-CTGGAGC  177
      || ||||||| |||||||| |||||||||  | |||| |||| ||| |||
seq2  ATCCAAGTTCTTTACATTATTAGAGCAAAACCTTTTTTTCCACCTGAAGC  199

seq1  TTTTATCCATGGCCTTCTCTAGTCCCCAGAAACGATCAGCTTTCAATTTG  227
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCATGGCCTTCTCTAGTCCCCAGAAACGATCAGCTTTCAATTTG  249

seq1  TAATCTTTAAATTTTTTCTCCGTTTTTATTTTTTAGTATTTTGTACGAAT  277
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTTAAATTTTTTCTCCGTTTTTATTTTTTAGTATTTTGTACGAAT  299

seq1  CATCCATGTATATATATTTTTTCCTTTTATAATGTTGGAAAACTCAATTC  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATGTATATATATTTTTTCCTTTTATAATGTTGGAAAACTCAATTC  349

seq1  TACACAATGTGGCCCGCCCAGTATTTTATCAATATTTTGGGTGGACGATA  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAATGTGGCCCGCCCAGTATTTTATCAATATTTTGGGTGGACGATA  399

seq1  AGTAGTAGAAATTTTATAATGGCTTTTAAATAAAAGATTAATTTACCGTG  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAGAAATTTTATAATGGCTTTTAAATAAAAGATTAATTTACCGTG  449

seq1  TTTCATGTATATGAGTACACTGTAGCTGTACAGATGGTTGTGAGGCCTCA  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTATATGAGTACACTGTAGCTGTACAGATGGTTGTGAGGCCTCA  499

seq1  CGTACGCACAGGGTTGCTGGGAATTGAACTCAGGACCTTCAGAAGACCAG  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACGCACAGGGTTGCTGGGAATTGAACTCAGGACCTTCAGAAGACCAG  549

seq1  TCAGTGCTCTTACCAGCTGAGCCATTTAACCAGCACCAGAATGGTTTTTA  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTCTTACCAGCTGAGCCATTTAACCAGCACCAGAATGGTTTTTA  599

seq1  TTCGCTAGGTAAGAAAAGAAAATAGGGGGGGAATCATGCAAATTAGTAAA  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTAGGTAAGAAAAGAAAATAGGGGGGGAATCATGCAAATTAGTAAA  649

seq1  CATATGTTGGTCTTTTAAATGTTTTAAATGGACAACAGCGATGTGCTTGC  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTTGGTCTTTTAAATGTTTTAAATGGACAACAGCGATGTGCTTGC  699

seq1  TATATCCCGGGCTCAGAGCTGTGGTCTAAAACTGGTAACTGCTATCTCGG  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCCGGGCTCAGAGCTGTGGTCTAAAACTGGTAACTGCTATCTCGG  749

seq1  GTGTAATGGGGGCATGGACTTGCAATAGGAGGCCTCTGCAGGTAGCTGCC  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATGGGGGCATGGACTTGCAATAGGAGGCCTCTGCAGGTAGCTGCC  799

seq1  CTAACAACTCCCTCCATTCACCAATTCTTATCTGCTATTCAATTAATTTT  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAACTCCCTCCATTCACCAATTCTTATCTGCTATTCAATTAATTTT  849

seq1  TATCTGCTTTGTTCATACTTATCAAGTACTGTGTCCATTTCTGACTCTGA  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCTTTGTTCATACTTATCAAGTACTGTGTCCATTTCTGACTCTGA  899

seq1  AGCCCAATACCACACTACGCCCACCCCTCAACCAGCCAGTCTCTTGGTTC  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAATACCACACTACGCCCACCCCTCAACCAGCCAGTCTCTTGGTTC  949

seq1  AATCCTCCACATCATCCCTACTTCCTTTGCGGTTGGTGACATCAGGGTCT  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCCACATCATCCCTACTTCCTTTGCGGTTGGTGACATCAGGGTCT  999

seq1  CTCCGCCTACTTAAATTGGTTGCGACTTGGGCGCGAGTGGTCATTTTGGA  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCCTACTTAAATTGGTTGCGACTTGGGCGCGAGTGGTCATTTTGGA  1049

seq1  GTCGGAGTTGTTGCAGGACGGTGTGATCCATTAAAGCTGAGAAAATAGAA  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGAGTTGTTGCAGGACGGTGTGATCCATTAAAGCTGAGAAAATAGAA  1099

seq1  AATCAAGAAAAGGTAATGAATTC  1100
      |||||||||||||||||||||||
seq2  AATCAAGAAAAGGTAATGAATTC  1122