BAC Information

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BAC

Clone NameB6Ng01-229H22
ChromosomeY (Build37)4 (Build37)
Map Location 2,430,665 - 2,430,7118,732,720 - 8,733,619
singlet/doubletsingletsinglet
Overlap geneLOC676356
Upstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581
Downstream geneLOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229H22.bB6Ng01-229H22.g
ACCGA042622GA042623
length378901
definitionB6Ng01-229H22.b B6Ng01-229H22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(2,430,665 - 2,430,711)(8,732,720 - 8,733,619)
sequence
gaattctctcatgtctcctagaactctggctcctgtcgaagttaccgccc
ccacagcccccacaggagatgcatggcttttagtcaagtaggcaatgtcc
caagtttctgaccttcaggctagacctccccacttacctagcaacagtaa
agataacggcacaccatgagaagggctgtttggcccctcctcactctctt
actctcttgctcttaatccccttactctcctctctcttctcctctcactc
tctccctcttactctctctttctctctagcctttcttctctctctctccc
tttttcccttctctcctcttggccatggctggtctctcctctctctctct
ctctctctctctttctctctctctctct
gaattcagtgctgtagctcccggaaccataataaaccactcgagctcatc
tcctgctgcttggcaccgtcagaacccctttataaaattactgccttgga
gtacccagcagggcacactgtattttctgtgcaatgtaaatgatggataa
aatagtttgtatgtagctcgggcagtaacagaattgattattgcaaagat
tttatttattcttttttttttgctcttactgtactttagttaacaaactg
gctgccagttgaaaggccctattaaatgcagcttggtgtttagctggcaa
tcggatctctattaaattgttgtacacagcctccataggacagagctgcc
tacagtagcagggcagagggagcattcagtccgtgaatatcggtgcaggg
aagttgctcctgaccggctgtcgcgcacaggttacttttccttagcagcc
agggaggatgcgttgtggcttgagggactgtgcttctctccgtaattaac
cacacagtcaggaagtcataagcacagcccttcctttgccttgctgtatg
tagtgtgaggtttttcttgtttttagtaatttttcccactgttaactttg
ggccctgtggttgaaagggcaggaggcatgggcagaggggagtggtgctt
tcccactcgcgcttgcagcacaggtcagatggcttgccagtgggatcggc
tgataccactttctctttttcaggaatctgttgatgcagaaagcccagtg
gtggagaagattatgagcagccgcctagtgaaaaagcaggtgagcggcgc
cctgtgcaaagatgaggatcccatggggtgatcgtccaggtggtttgctg
catactgccctgttaagatgccactatggcgcggggtatggtgggtgggt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2430665_2430711
seq2: B6Ng01-229H22.b_376_421

seq1  TCTCTCTCTCTTTCTCCCTCTCTCTCTCTCTTTCTCTCTCTCTCTCT  47
      |||||| |||| |||| ||||||||||||||||||||||||||||||
seq2  TCTCTC-CTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCT  46

seq1: chr4_8732720_8733619
seq2: B6Ng01-229H22.g_71_971

seq1  GAATTCAGTGCTGTAGCTCCCGGAACCATAATAAACCACTCGAGCTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCTGTAGCTCCCGGAACCATAATAAACCACTCGAGCTCATC  50

seq1  TCCTGCTGCTTGGCACCGTCAGAACCCCTTTATAAAATTACTGCCTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTGCTTGGCACCGTCAGAACCCCTTTATAAAATTACTGCCTTGGA  100

seq1  GTACCCAGCAGGGCACACTGTATTTTCTGTGCAATGTAAATGATGGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCAGCAGGGCACACTGTATTTTCTGTGCAATGTAAATGATGGATAA  150

seq1  AATAGTTTGTATGTAGCTCGGGCAGTAACAGAATTGATTATTGCAAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTGTATGTAGCTCGGGCAGTAACAGAATTGATTATTGCAAAGAT  200

seq1  TTTATTTATTCTTTTTTTTTTGCTCTTACTGTACTTTAGTTAACAAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTCTTTTTTTTTTGCTCTTACTGTACTTTAGTTAACAAACTG  250

seq1  GCTGCCAGTTGAAAGGCCCTATTAAATGCAGCTTGGTGTTTAGCTGGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAGTTGAAAGGCCCTATTAAATGCAGCTTGGTGTTTAGCTGGCAA  300

seq1  TCGGATCTCTATTAAATTGTTGTACACAGCCTCCATAGGACAGAGCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGATCTCTATTAAATTGTTGTACACAGCCTCCATAGGACAGAGCTGCC  350

seq1  TACAGTAGCAGGGCAGAGGGAGCATTCAGTCCGTGAATATCGGTGCAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAGCAGGGCAGAGGGAGCATTCAGTCCGTGAATATCGGTGCAGGG  400

seq1  AAGTTGCTCCTGACCGGCTGTCGCGCACAGGTTACTTTTCCTTAGCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCTCCTGACCGGCTGTCGCGCACAGGTTACTTTTCCTTAGCAGCC  450

seq1  AGGGAGGATGCGTTGTGGCTTGAGGGACTGTGCTTCTCTCCGTAATTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGATGCGTTGTGGCTTGAGGGACTGTGCTTCTCTCCGTAATTAAC  500

seq1  CACACAGTCAGGAAGTCATAAGCACAGCCCTTCCTTTGCCTTGCTGTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGTCAGGAAGTCATAAGCACAGCCCTTCCTTTGCCTTGCTGTATG  550

seq1  TAGTGTGAGGTTTTTCTTGTTTTTAGTAATTTTTCCCACTGTTAACTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGAGGTTTTTCTTGTTTTTAGTAATTTTTCCCACTGTTAACTTTG  600

seq1  GGCCCTGTGGTTGAAAGGGCAGGAGGCATGGGCAGAGGGGAGTGGTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGTGGTTGAAAGGGCAGGAGGCATGGGCAGAGGGGAGTGGTGCTT  650

seq1  TCCCACTCGCGCTTGCAGCACAGGTCAGATGGCTTGCCAGTGGGATCGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTCGCGCTTGCAGCACAGGTCAGATGGCTTGCCAGTGGGATCGGC  700

seq1  TGATACCACTTTCTCTTTTTCAGGAATCTGTTGATGCAGAAGGCCCAGTG  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGATACCACTTTCTCTTTTTCAGGAATCTGTTGATGCAGAAAGCCCAGTG  750

seq1  GTGGAGAAGATTATGAGCAGCCGCCTAGTGAAAAAGCAGGTGAGCGGCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAAGATTATGAGCAGCCGCCTAGTGAAAAAGCAGGTGAGCGGCGC  800

seq1  CCTGTGCAAAGATGAGGATCCCATGGGGTGATCGTCCAGGTGGTTTGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCAAAGATGAGGATCCCATGGGGTGATCGTCCAGGTGGTTTGCTG  850

seq1  CATACTGCCCTGTTAAGATGCCACTATGGCGCGGGGTATGGT-GGTGGGT  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATACTGCCCTGTTAAGATGCCACTATGGCGCGGGGTATGGTGGGTGGGT  900

seq1  G  900
      |
seq2  G  901