BAC Information

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BAC

Clone NameB6Ng01-232I24
Chromosome12 (Build37)Y (Build37)
Map Location 96,979,609 - 96,980,7342,430,592 - 2,430,677
singlet/doubletsingletsinglet
Overlap geneLOC667688, Flrt2
Upstream geneLOC217786, LOC100039603
Downstream gene1700019M22Rik, LOC100039664
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232I24.bB6Ng01-232I24.g
ACCGA044866GA044867
length1,121459
definitionB6Ng01-232I24.b B6Ng01-232I24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,979,609 - 96,980,734)(2,430,592 - 2,430,677)
sequence
gaattcaaaaggatatttaaagttatcgagcaaggaactgcccagcagtc
caaacatccaaacttcagggctgtttcctttagtcttaaatcaaaataaa
ccacagctacatttcactgagagaataacacccatgaataccaatcaatc
ataactaatagctcttgtgtaccaaaataatgttcacctgagcactgaac
agaattaatccaaattcaactaattctaccttaccacagcccctggaatc
taaaagcaagacccatgcatacattctggtccatatatcccacaggctat
agtttagcagtcatcattaaggaaagagttcctattgctagaggtataat
tatatgtctctcgtagtatgtttacactagagaacattttaagttgtatg
tccatctgccaattatatccaaaatttatcctttcaaaggccataatctt
ggttgaagtaaaatgacacacaattgtgtttatgacacttccaatctgtg
accagaataaaatgaaaaaaaaaaaaaaaaacactgcaaaaaattttgaa
aagacatgtcacatctttattttaaatgaaatatggggaaggaaaattga
gttaccattctcataaagtttgtaaatatggattctctttgttcaaacca
gaaaaaaaaactcatttcatcatttaaaaaaattcattcctagaaattaa
acgcaaaagattctattaaaaaatacctttaaggatatttgcaatgcctg
catcatattgatgacatttaacctctcattccagcaggcgatgggtatct
gcattctggaagaaagctttaattctatggcttctgtaatggtgagcatg
catgcctaagaagactggggttgtgaactttgaagaaggaaacaggcacc
acaccaaccacaacacccttccaagaaactgagatgcggtagagtttcct
gaactgtgacagcccaaacgctggcacttcccagttattgctctctttct
ttaccactaagcatgccttttctgagccagtggctttccttcatgagcac
cgcgactacagcgtctcatcagagcactgtttgtttctcttctgaatctg
gagcactgggttgactctcga

gaattcctgagaactctggcaccaaatttgtactgtagagacaaccagtc
ttgaaggctgaataactacaactacaactacaagattctcctcaggatac
agatattgttgaacttacaagaccacaccctacaaaccacttgaataaat
caaatctatcttctttctttctttctttctttctttctttctttctttct
ttctttctttctctctctctctttcttccttacctctttctctcctcact
ttctctccctgcatatatataaatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatataaaagagagagagagagagagagagaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_96979609_96980734
seq2: B6Ng01-232I24.b_52_1172 (reverse)

seq1  TCGAGAGGTCAA-CCAGTGCTCCAGATTTCAGAGGAG-AACAAACAGTGC  48
      |||||| ||||| ||||||||||||| |||||| ||| ||||||||||||
seq2  TCGAGA-GTCAACCCAGTGCTCCAGA-TTCAGAAGAGAAACAAACAGTGC  48

seq1  TCTGAATGAGACGCTTGTGGTCGCGGTGGCTCATTGAAGG-AAGCCACTG  97
      |||| ||||||||| ||| |||||||| ||||| |||||| |||||||| 
seq2  TCTG-ATGAGACGC-TGTAGTCGCGGT-GCTCA-TGAAGGAAAGCCACT-  93

seq1  GGCTCAG-AAAGGCATGCTTTAGTGGTAAAGAAAGGAGAGCAATAACTGG  146
      ||||||| |||||||||| ||||||||||||||| |||||||||||||||
seq2  GGCTCAGAAAAGGCATGC-TTAGTGGTAAAGAAA-GAGAGCAATAACTGG  141

seq1  GAAGTGCCAGCGTTTTGGCTGTCACAGTTCAGGAAACTCTACCGCATCTC  196
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAAGTGCCAGCGTTTGGGCTGTCACAGTTCAGGAAACTCTACCGCATCTC  191

seq1  AGTTTCTTGGAAGGGTGTTGTGGTTGGTGTGGTGCCTGTTTCCTTCTTCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTGGAAGGGTGTTGTGGTTGGTGTGGTGCCTGTTTCCTTCTTCA  241

seq1  AAGTTCACAACCCCAGTCTTCTTAGGCATGCATGCTCACCATTACAGAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCACAACCCCAGTCTTCTTAGGCATGCATGCTCACCATTACAGAAG  291

seq1  CCATAGAATTAAAGCTTTCTTCCAGAATGCAGATACCCATCGCCTGCTGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAATTAAAGCTTTCTTCCAGAATGCAGATACCCATCGCCTGCTGG  341

seq1  AATGAGAGGTTAAATGTCATCAATATGATGCAGGCATTGCAAATATCCTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAGGTTAAATGTCATCAATATGATGCAGGCATTGCAAATATCCTT  391

seq1  AAAGGTATTTTTTAATAGAATCTTTTGCGTTTAATTTCTAGGAATGAATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTATTTTTTAATAGAATCTTTTGCGTTTAATTTCTAGGAATGAATT  441

seq1  TTTTTAAATGATGAAATGAGTTTTTTTTTCTGGTTTGAACAAAGAGAATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATGATGAAATGAGTTTTTTTTTCTGGTTTGAACAAAGAGAATC  491

seq1  CATATTTACAAACTTTATGAGAATGGTAACTCAATTTTCCTTCCCCATAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTACAAACTTTATGAGAATGGTAACTCAATTTTCCTTCCCCATAT  541

seq1  TTCATTTAAAATAAAGATGTGACATGTCTTTTCAAAATTTTTTGCAGTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAAAATAAAGATGTGACATGTCTTTTCAAAATTTTTTGCAGTGT  591

seq1  TTTTTTTTTTTTTTTTCATTTTATTCTGGTCACAGATTGGAAGTGTCATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTCATTTTATTCTGGTCACAGATTGGAAGTGTCATA  641

seq1  AACACAATTGTGTGTCATTTTACTTCAACCAAGATTATGGCCTTTGAAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAATTGTGTGTCATTTTACTTCAACCAAGATTATGGCCTTTGAAAG  691

seq1  GATAAATTTTGGATATAATTGGCAGATGGACATACAACTTAAAATGTTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTTTGGATATAATTGGCAGATGGACATACAACTTAAAATGTTCT  741

seq1  CTAGTGTAAACATACTACGAGAGACATATAATTATACCTCTAGCAATAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTAAACATACTACGAGAGACATATAATTATACCTCTAGCAATAGG  791

seq1  AACTCTTTCCTTAATGATGACTGCTAAACTATAGCCTGTGGGATATATGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTCCTTAATGATGACTGCTAAACTATAGCCTGTGGGATATATGG  841

seq1  ACCAGAATGTATGCATGGGTCTTGCTTTTAGATTCCAGGGGCTGTGGTAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAATGTATGCATGGGTCTTGCTTTTAGATTCCAGGGGCTGTGGTAA  891

seq1  GGTAGAATTAGTTGAATTTGGATTAATTCTGTTCAGTGCTCAGGTGAACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAATTAGTTGAATTTGGATTAATTCTGTTCAGTGCTCAGGTGAACA  941

seq1  TTATTTTGGTACACAAGAGCTATTAGTTATGATTGATTGGTATTCATGGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGGTACACAAGAGCTATTAGTTATGATTGATTGGTATTCATGGG  991

seq1  TGTTATTCTCTCAGTGAAATGTAGCTGTGGTTTATTTTGATTTAAGACTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTCTCTCAGTGAAATGTAGCTGTGGTTTATTTTGATTTAAGACTA  1041

seq1  AAGGAAACAGCCCTGAAGTTTGGATGTTTGGACTGCTGGGCAGTTCCTTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACAGCCCTGAAGTTTGGATGTTTGGACTGCTGGGCAGTTCCTTG  1091

seq1  CTCGATAACTTTAAATATCCTTTTGAATTC  1126
      ||||||||||||||||||||||||||||||
seq2  CTCGATAACTTTAAATATCCTTTTGAATTC  1121


seq1: chrY_2430592_2430677
seq2: B6Ng01-232I24.g_443_528 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTT  86
      ||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTT  86


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