BAC Information

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BAC

Clone NameB6Ng01-246N23
ChromosomeY (Build37)
Map Location 2,420,771 - 2,565,208
singlet/doubletdoublet
Overlap geneLOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227
Upstream geneZfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581
Downstream geneLOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246N23.bB6Ng01-246N23.g
ACCGA055366GA055367
length1,091973
definitionB6Ng01-246N23.b B6Ng01-246N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(2,420,771 - 2,421,856)(2,564,245 - 2,565,208)
sequence
gaattcttattcttggacctggagcttcttgttcctttgtctgcctccct
ctggtgtttgattgaggacattgcagtcctttccgattctttttatgcta
agccagaggctgactgttgaaagacccttggcttctgtacatctgagctt
tagcgtgtcttttgtctgggctgctgcctgcagcttgtgtaccaccgatc
tcaggcagcctacaagaaaagaagtagtcgggagaaggggtctggctgca
cagtgtcctacacaaacttggggataaggaaaatgagcaagagaagcctg
aagcctgactaggggcagagatgcccagatcagacccctatgcctgtgag
aaggattggaaatttagctgcatattttacagctgttgatcctcagctgt
gaaggctgcatctcaggcagccggccccagtgtccctggtctttctctca
gccccaggcaaccccagactgtgtttgtggcattggcaccacctcatgtc
ttggtcctgcctcctattggagcataggcagtggggagggagcctcacag
ttatctctctgtacacctcttagacccactccacactttatttccaccgt
ctgcagctttagagcacaaccctagttgtttatattcaggagtgtgggag
gcttttatctcaggttagctcagttctaagccagacatttagtgtgccaa
tttgttacagacctttgtcatcctactaagattgcatacaagacacacaa
tctagatactttcattgtaaaccatatgcttagactgagcagatctagga
ctatactagcttattccactgctctatttatttgctgtttttatttgctg
ttttctcctgaccacgtgttttctgtttccatggggcttccccctactct
gtcttcttcttcttcttctcttccatatctctctctatctgcaagccttc
tttggagccctccattccctcctttccattccactgccaagcataggctt
ctattctagtgttccggtgttcagttaaatggggagaaatgtaacactga
gttactagatggtcctgctcttgggggtgggggtgagggaa
gaattccaagaggctgttgagtcatgcctgaaagcgggcagacaagagga
ggggagggtctcttgatgtccctaagccaaataagtctcctgggatcaaa
acatttgcctggagagttatccaaaggagcaggtaagaagcacctagcac
caattcaaagcattgatggggggaagatgatgaagagacccagggggacc
tttgtggctctgacgacagtgatgaagatatggtggatgactatggagct
gcctctaactcggaggatgagaaggtaaagtggttggctattgaaagagc
tgccctgaagcagaaagcccaggatgccacaattgggttccagtggagtg
aagaggacaatgatgaagataatgatggtgatgatggtgtgtcccctgag
tcctaacacagaaagtatgacaaatcagagatggattttcagattaatgt
ggaagatgaggaagcctttgtgctgcctcctgctggggagatggaccaga
ttggccaggctccacacttgaagcaagttcacaagcggaaactgggagtg
ctgcaggattttggagctcagcgagaagagggccggactccagttgagta
tctgagtcggcttcagaaggacctagccacttatggagacttcctgttga
gcaagctgattggagctgttccctctgtctgagttggtctagttcttaga
agctaacaaggtgcccaggccaattgtgggattaatctggatccactggg
gaagtggtcaaaaactgtacttttgagactgccttttacatagtttatac
taaatcaaaggatgggacagccagcagaaaaaagttttaacccatttttt
tttctatgtcaaacaacaaaacaaaaacaaacataaataggcagacattg
tggaccaattgtggctccaaggacagacaatagacatagagggaatagaa
ctttatgtcttcaaagggaccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2420771_2421856
seq2: B6Ng01-246N23.b_46_1136

seq1  GAATTCTTATTCTTGGACCTGGAGCTTCTTGTTCCTTTGTCTGCCTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTCTTGGACCTGGAGCTTCTTGTTCCTTTGTCTGCCTCCCT  50

seq1  CTGGTGTTTGATTGAGGACATTGCAGTCCTTTCCGATTCTTTTTATGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTTGATTGAGGACATTGCAGTCCTTTCCGATTCTTTTTATGCTA  100

seq1  AGCCAGAGGCTGACTGTTGAAAGACCCTTGGCTTCTGTACATCTGAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGGCTGACTGTTGAAAGACCCTTGGCTTCTGTACATCTGAGCTT  150

seq1  TAGCGTGTCTTTTGTCTGGGCTGCTGCCTGCAGCTTGTGTACCACCGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGTGTCTTTTGTCTGGGCTGCTGCCTGCAGCTTGTGTACCACCGATC  200

seq1  TCAGGCAGCCTACAAGAAAAGAAGTAGTCGGGAGAAGGGGTCTGGCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCAGCCTACAAGAAAAGAAGTAGTCGGGAGAAGGGGTCTGGCTGCA  250

seq1  CAGTGTCCTACACAAACTTGGGGATAAGGAAAATGAGCAAGAGAAGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCTACACAAACTTGGGGATAAGGAAAATGAGCAAGAGAAGCCTG  300

seq1  AAGCCTGACTAGGGGCAGAGATGCCCAGATCAGACCCCTATGCCTGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGACTAGGGGCAGAGATGCCCAGATCAGACCCCTATGCCTGTGAG  350

seq1  AAGGATTGGAAATTTAGCTGCATATTTTACAGCTGTTGATCCTCAGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTGGAAATTTAGCTGCATATTTTACAGCTGTTGATCCTCAGCTGT  400

seq1  GAAGGCTGCATCTCAGGCAGCCGGCCCCAGTGTCCCTGGTCTTTCTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTGCATCTCAGGCAGCCGGCCCCAGTGTCCCTGGTCTTTCTCTCA  450

seq1  GCCCCAGGCAACCCCAGACTGTGTTTGTGGCATTGGCACCACCTCATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGGCAACCCCAGACTGTGTTTGTGGCATTGGCACCACCTCATGTC  500

seq1  TTGGTCCTGCCTCCTATTGGAGCATAGGCAGTGGGGAGGGAGCCTCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCTGCCTCCTATTGGAGCATAGGCAGTGGGGAGGGAGCCTCACAG  550

seq1  TTATCTCTCTGTACACCTCTTAGACCCACTCCACACTTTATTTCCACCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTCTGTACACCTCTTAGACCCACTCCACACTTTATTTCCACCGT  600

seq1  CTGCAGCTTTAGAGCACAACCCTAGTTGTTTATATTCAGGAGTGTGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTTTAGAGCACAACCCTAGTTGTTTATATTCAGGAGTGTGGGAG  650

seq1  GCTTTTATCTCAGGTTAGCTCAGTTCTAAGCCAGACATTTAGTGTGCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTATCTCAGGTTAGCTCAGTTCTAAGCCAGACATTTAGTGTGCCAA  700

seq1  TTTGTTACAGACCTTTGTCATCCTACTAAGATTGCATACAAGACACACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTACAGACCTTTGTCATCCTACTAAGATTGCATACAAGACACACAA  750

seq1  TCTAGATACTTTCATTGTAAACCATATGCTTAGACTGAGCAGATCTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATACTTTCATTGTAAACCATATGCTTAGACTGAGCAGATCTAGGA  800

seq1  CTATACTAGCTTATTCCACTGCTCTATTTATTTGCTGTTTTTATTTGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTAGCTTATTCCACTGCTCTATTTATTTGCTGTTTTTATTTGCTG  850

seq1  -TTTCTCCTGACCACGTG-TTTCTG-TTCCATGGGGGCTTCCCCCTACTC  897
       ||||||||||||||||| |||||| |||||| |||||||||||||||||
seq2  TTTTCTCCTGACCACGTGTTTTCTGTTTCCAT-GGGGCTTCCCCCTACTC  899

seq1  TGTCTTCTTCTTCTTCTTCTCTTCCATATCTCTCTCTATCTGCAAGCC-T  946
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGTCTTCTTCTTCTTCTTCTCTTCCATATCTCTCTCTATCTGCAAGCCTT  949

seq1  CTTTGGAG-CCTCCAATCCCTCCTTTCCATTCCACTGCCCAAGCATAGGC  995
      |||||||| |||||| ||||||||||||||||||||| ||||||||||||
seq2  CTTTGGAGCCCTCCATTCCCTCCTTTCCATTCCACTG-CCAAGCATAGGC  998

seq1  -TCTA-TCTAGTGTTCCGTTGTCCAGTTAAAATGGGGAGAAATGGTAACA  1043
       |||| |||||||||||| ||| ||||| |||||||||||||| ||||||
seq2  TTCTATTCTAGTGTTCCGGTGTTCAGTT-AAATGGGGAGAAAT-GTAACA  1046

seq1  CTTGAG-TACTAGATGGT-CTGCTCTT-GGGGTGGGGGTGAGGGAA  1086
      | |||| ||||||||||| |||||||| ||||||||||||||||||
seq2  C-TGAGTTACTAGATGGTCCTGCTCTTGGGGGTGGGGGTGAGGGAA  1091

seq1: chrY_2564245_2565208
seq2: B6Ng01-246N23.g_68_1040 (reverse)

seq1  TGGGTCCCTTTG-AGACATTAAGTTCTATTCCCTCTATGTCTATTGTCTG  49
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  TGGGTCCCTTTGAAGACATAAAGTTCTATTCCCTCTATGTCTATTGTCTG  50

seq1  TCCTTGGTG-CACCATTTGTCCAC-ATGTCTGCCTATTTATGTTTGTTTT  97
      ||||||| | ||| ||| |||||| |||||||||||||||||||||||||
seq2  TCCTTGGAGCCACAATTGGTCCACAATGTCTGCCTATTTATGTTTGTTTT  100

seq1  TGTTTTGTTGTTTGACATAGAAAAAAAA--TGGTTAAAAC-TTTTTCTGC  144
      ||||||||||||||||||||||||||||   ||||||||| |||||||||
seq2  TGTTTTGTTGTTTGACATAGAAAAAAAAATGGGTTAAAACTTTTTTCTGC  150

seq1  TGGCTGT-CCATCCTTTGATTTAGTATAACTTATGTAAAAGGCAGTCTC-  192
      ||||||| |||||||||||||||||||||  |||||||||||||||||| 
seq2  TGGCTGTCCCATCCTTTGATTTAGTATAAACTATGTAAAAGGCAGTCTCA  200

seq1  AAAGTACAGTTTTTGACCACTTCCCCAGTGGATCCAGATTAATCCCACAA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACAGTTTTTGACCACTTCCCCAGTGGATCCAGATTAATCCCACAA  250

seq1  TTGGCCTGGGCACCTTGTTAGCTTCTAAGAACTAGACCAACTCAGACAGA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTGGGCACCTTGTTAGCTTCTAAGAACTAGACCAACTCAGACAGA  300

seq1  GGGAACAGCTCC-ATCAGCTTGCTCAACAGGAAGTCTCCATAAGTGGCTA  341
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGGAACAGCTCCAATCAGCTTGCTCAACAGGAAGTCTCCATAAGTGGCTA  350

seq1  GGTCCTTCTGAAGCCGACTCAGATACTCAACTGGAGTCCGGCCCTCTTCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTCTGAAGCCGACTCAGATACTCAACTGGAGTCCGGCCCTCTTCT  400

seq1  CGCTGAGCTCCAAAATCCTGCAGCACTCCCAGTTTCCGCTTGTGAACTTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGAGCTCCAAAATCCTGCAGCACTCCCAGTTTCCGCTTGTGAACTTG  450

seq1  CTTCAAGTGTGGAGCCTGGCCAATCTGGTCCATCTCCCCAGCAGGAGGCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTGTGGAGCCTGGCCAATCTGGTCCATCTCCCCAGCAGGAGGCA  500

seq1  GCACAAAGGCTTCCTCATCTTCCACATTAATCTGAAAATCCATCTCTGAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAGGCTTCCTCATCTTCCACATTAATCTGAAAATCCATCTCTGAT  550

seq1  TTGTCATACTTTCTGTGTTAGGACTCAGGGGACACACCATCATCACCATC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATACTTTCTGTGTTAGGACTCAGGGGACACACCATCATCACCATC  600

seq1  ATTATCTTCATCATTGTCCTCTTCACTCCACTGGAACCCAATTGTGGCAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTCATCATTGTCCTCTTCACTCCACTGGAACCCAATTGTGGCAT  650

seq1  CCTGGGCTTTCTGCTTCAGGGCAGCTCTTTCAATAGCCAACCACTTTACC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTTTCTGCTTCAGGGCAGCTCTTTCAATAGCCAACCACTTTACC  700

seq1  TTCTCATCCTCCGAGTTAGAGGCAGCTCCATAGTCATCCACCATATCTTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATCCTCCGAGTTAGAGGCAGCTCCATAGTCATCCACCATATCTTC  750

seq1  ATCACTGTCGTCAGAGCCACAAAGGTCCCCCTGGGTCTCTTCATCATCTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGTCGTCAGAGCCACAAAGGTCCCCCTGGGTCTCTTCATCATCTT  800

seq1  CCCCCCATCAATGCTTTGAATTGGTGCTAGGTGCTTCTTACCTGCTCCTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCATCAATGCTTTGAATTGGTGCTAGGTGCTTCTTACCTGCTCCTT  850

seq1  TGGATAACTCTCCAGGCAAATGTTTTGATCCCAGGAGACTTATTTGGCTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAACTCTCCAGGCAAATGTTTTGATCCCAGGAGACTTATTTGGCTT  900

seq1  AGGGACATCAAGAGACCCTCCCCTCCTCTTGTCTGCCCGCTTTCAGGCAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACATCAAGAGACCCTCCCCTCCTCTTGTCTGCCCGCTTTCAGGCAT  950

seq1  GACTCAACAGCCTCTTGGAATTC  964
      |||||||||||||||||||||||
seq2  GACTCAACAGCCTCTTGGAATTC  973