BAC Information

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BAC

Clone NameB6Ng01-255J21
ChromosomeY (Build37)
Map Location 722,949 - 845,863
singlet/doubletdoublet
Overlap geneUsp9y
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246
Downstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255J21.bB6Ng01-255J21.g
ACCGA061782GA061783
length1,1521,119
definitionB6Ng01-255J21.b B6Ng01-255J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(844,706 - 845,863)(722,949 - 724,082)
sequence
gaattcactgcctctgacccatatggattgctcttgctgcccttgcttac
tggacaattatgtgagaaaaattagcaatctgatagactttctaattctg
tattggccacatattcacttctgtaatggcccaaatagtctagttctctg
aatcctgcaagaaacagttgattatcctggtatactgtcattagcattta
ggtatgctaataatttgggaggtggatcaaggcaaaattctgtgggtttg
aagccagcctggagtaaattgagttctaggctagatgggttgagtaattt
atatcatagttttgccaatagaaaatatcaaaaaaaaaaaacttaatcaa
catttgctagaacaaatatgttatccagagtttccctggttaatttttta
agctccaagttcatgttgctaaggagctcattatggcgttaggtattgga
gtagccacacaatatgtttttcttttctgatgacaggatcttattctgta
gcccagatccttattcttcagccttctcagtaccttgattgcaggcttgt
aatgaaaaacatagctccaaatcagcaattcctgacttttatttcttata
atcaagacatagttttaaaattaaactcgaaaatctatgagtggaggtac
acacctataattctattaccctgatcattgaggaagaagattgcttaata
tcaaagcaaacccattcacatcaaaaggccttatcatgaactaagaaata
tagttaatgactatcttctttctgctccagcaggctaacctctcagagca
tcagtgatggggaaatgccttttttttttcattttcccttatcaaatgag
gtagcctgagtcataagaaaagatggaggacattaactaagattgtttca
gtcattctattctcatggccatactcacagatttacacaggtaaatgttt
ggtgctggagtgactattaacatcaactttactgaaaatagtctaaattc
atgacagaattcatactttctaaccgtgattttcaatagttggacagaat
actgaacacagcactcactgtcttctgtggcagttgtaatttctttgcca
aggctgtcacttatggcctgtattagatgggttctagactcagcaattcc
ac
gaattcaatatgtatagaccaggctggctttgaactaccagagatcagtc
aacagtgctgagaataaaggtatgaaccttaatctgcctagtttgctaaa
tgtcataaaaataattatgttgtttaactctcctttccttttgagtataa
tatttcccaccacatttaattttgatatgctatagcctttcaacatatag
aaaatattttagtgtaaaatggtggaattacttctctagctcagtaaaat
tacagagtggtaaaatgagattaaattttatgatattataattatttctc
ccaccagcctttgagtattgatcaaaaatatcttaaaaagacatttctct
tatgattacaaacataggtattaataactcaaagtaggacagtctgaaat
cctttacaaaattaatgcttcagatttcctttattaacaactgacataca
tactattccctctagtgtttgttaaaagaagtagcataaagaaaaatttt
taaaaagtgagcatggtgacaggtctttaatctgagcactcaggaaacag
aggcaggctgttctctgtgatttcaagtccatcctggtctttgtatcaag
ctctaagctagtcaaagctacatacagtgagaacttgtctcaaaaatgca
atcaaatacaatccaaacaaccaaacccttcatctctcaatcaaaaaatt
cctataaaaatctaaagtacccactaggataaaaataataaactgtttta
cttcagtaattttaaattatatgaaaacataaaatattattataccatac
tatagtacatttgagaaagttaaaactaaagtatgaataatatatctgac
acaaatgtacattcatgaaataaagaaaaatactatttttatattctctt
tgttttaacaagtattactttatttacaatttagtatatattattaacct
ataaatataaagtcataatgataatgtttaaatacttccagattcagagc
tgttaaataataaaatttcatctggacattccatatgatactgtttttat
ggaaataatattaagaatagaaaaatgaagctgtggacattttggaatag
gaagtaaaccgaaatataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_844706_845863
seq2: B6Ng01-255J21.b_49_1200 (reverse)

seq1  GTGGAAGTGCTGAGTCTAAGAACACCATCT-ATACAAGCCCATAAGTGAC  49
      |||||| |||||||||| ||||| |||||| |||| || |||||||||||
seq2  GTGGAATTGCTGAGTCT-AGAAC-CCATCTAATAC-AGGCCATAAGTGAC  47

seq1  AG-CTCTGCAAAGAAATTACAAACTGCCACAGAAGGACAAGTGAGTGCCT  98
      || ||  ||||||||||||| ||||||||||||| ||| |||||||| ||
seq2  AGCCTTGGCAAAGAAATTAC-AACTGCCACAGAA-GAC-AGTGAGTG-CT  93

seq1  GTGTTCAGTTATCTGTCCAACTAATTGAAAATCACGGGTTAGGAAGTATG  148
      |||||||||  ||||||||||| |||||||||||| |||||| |||||||
seq2  GTGTTCAGTATTCTGTCCAACT-ATTGAAAATCAC-GGTTAGAAAGTATG  141

seq1  AATTCTGTCATGAATTTAGACTATTTTCAGTAAAGTTGATGTTAATAGTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTCATGAATTTAGACTATTTTCAGTAAAGTTGATGTTAATAGTC  191

seq1  ACTCCAGCACCAAACATTTACCTGTGTAAATCTGTGAGTATGGCCATGAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCACCAAACATTTACCTGTGTAAATCTGTGAGTATGGCCATGAG  241

seq1  AATAGAATGACTGAAACAATCTTAGTTAATGTCCTCCATCTTTTCTTATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATGACTGAAACAATCTTAGTTAATGTCCTCCATCTTTTCTTATG  291

seq1  ACTCAGGCTACCTCATTTGATAAGGGAAAATG-AAAAAAAAAGGCATTTC  347
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACTCAGGCTACCTCATTTGATAAGGGAAAATGAAAAAAAAAAGGCATTTC  341

seq1  CCCATCACTGATGCTCTGAGAGGTTAGCCTGCTGGAGCAGAAAGAAGATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCACTGATGCTCTGAGAGGTTAGCCTGCTGGAGCAGAAAGAAGATA  391

seq1  GTCATTAACTATATTTCTTAGTTCATGATAAGGCCTTTTGATGTGAATGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAACTATATTTCTTAGTTCATGATAAGGCCTTTTGATGTGAATGG  441

seq1  GTTTGCTTTGATATTAAGCAATCTTCTTCCTCAATGATCAGGGTAATAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTTGATATTAAGCAATCTTCTTCCTCAATGATCAGGGTAATAGA  491

seq1  ATTATAGGTGTGTACCTCCACTCATAGATTTTCGAGTTTAATTTTAAAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGGTGTGTACCTCCACTCATAGATTTTCGAGTTTAATTTTAAAAC  541

seq1  TATGTCTTGATTATAAGAAATAAAAGTCAGGAATTGCTGATTTGGAGCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTTGATTATAAGAAATAAAAGTCAGGAATTGCTGATTTGGAGCTA  591

seq1  TGTTTTTCATTACAAGCCTGCAATCAAGGTACTGAGAAGGCTGAAGAATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCATTACAAGCCTGCAATCAAGGTACTGAGAAGGCTGAAGAATA  641

seq1  AGGATCTGGGCTACAGAATAAGATCCTGTCATCAGAAAAGAAAAACATAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTGGGCTACAGAATAAGATCCTGTCATCAGAAAAGAAAAACATAT  691

seq1  TGTGTGGCTACTCCAATACCTAACGCCATAATGAGCTCCTTAGCAACATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCTACTCCAATACCTAACGCCATAATGAGCTCCTTAGCAACATG  741

seq1  AACTTGGAGCTTAAAAAATTAACCAGGGAAACTCTGGATAACATATTTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGAGCTTAAAAAATTAACCAGGGAAACTCTGGATAACATATTTGT  791

seq1  TCTAGCAAATGTTGATTAAGTTTTTTTTTTTTGATATTTTCTATTGGCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAAATGTTGATTAAGTTTTTTTTTTTTGATATTTTCTATTGGCAA  841

seq1  AACTATGATATAAATTACTCAACCCATCTAGCCTAGAACTCAATTTACTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGATATAAATTACTCAACCCATCTAGCCTAGAACTCAATTTACTC  891

seq1  CAGGCTGGCTTCAAACCCACAGAATTTTGCCTTGATCCACCTCCCAAATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCTTCAAACCCACAGAATTTTGCCTTGATCCACCTCCCAAATT  941

seq1  ATTAGCATACCTAAATGCTAATGACAGTATACCAGGATAATCAACTGTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATACCTAAATGCTAATGACAGTATACCAGGATAATCAACTGTTT  991

seq1  CTTGCAGGATTCAGAGAACTAGACTATTTGGGCCATTACAGAAGTGAATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGGATTCAGAGAACTAGACTATTTGGGCCATTACAGAAGTGAATA  1041

seq1  TGTGGCCAATACAGAATTAGAAAGTCTATCAGATTGCTAATTTTTCTCAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCAATACAGAATTAGAAAGTCTATCAGATTGCTAATTTTTCTCAC  1091

seq1  ATAATTGTCCAGTAAGCAAGGGCAGCAAGAGCAATCCATATGGGTCAGAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGTCCAGTAAGCAAGGGCAGCAAGAGCAATCCATATGGGTCAGAG  1141

seq1  GCAGTGAATTC  1158
      |||||||||||
seq2  GCAGTGAATTC  1152

seq1: chrY_722949_724082
seq2: B6Ng01-255J21.g_66_1184

seq1  GAATTCAATATGTATAGACCAGGCTGGCTTTGAACTACCAGAGATCAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATGTATAGACCAGGCTGGCTTTGAACTACCAGAGATCAGTC  50

seq1  AACAGTGCTGAGAATAAAGGTATGAACCTTAATCTGCCTAGTTTGCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGCTGAGAATAAAGGTATGAACCTTAATCTGCCTAGTTTGCTAAA  100

seq1  TGTCATAAAAATAATTATGTTGTTTAACTCTCCTTTCCTTTTGAGTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAAAAATAATTATGTTGTTTAACTCTCCTTTCCTTTTGAGTATAA  150

seq1  TATTTCCCACCACATTTAATTTTGATATGCTATAGCCTTTCAACATATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCACCACATTTAATTTTGATATGCTATAGCCTTTCAACATATAG  200

seq1  AAAATATTTTAGTGTAAAATGGTGGAATTACTTCTCTAGCTCAGTAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTAGTGTAAAATGGTGGAATTACTTCTCTAGCTCAGTAAAAT  250

seq1  TACAGAGTGGTAAAATGAGATTAAATTTTATGATATTATAATTATTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTGGTAAAATGAGATTAAATTTTATGATATTATAATTATTTCTC  300

seq1  CCACCAGCCTTTGAGTATTGATCAAAAATATCTTAAAAAGACATTTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGCCTTTGAGTATTGATCAAAAATATCTTAAAAAGACATTTCTCT  350

seq1  TATGATTACAAACATAGGTATTAATAACTCAAAGTAGGACAGTCTGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTACAAACATAGGTATTAATAACTCAAAGTAGGACAGTCTGAAAT  400

seq1  CCTTTACAAAATTAATGCTTCAGATTTCCTTTATTAACAACTGACATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACAAAATTAATGCTTCAGATTTCCTTTATTAACAACTGACATACA  450

seq1  TACTATTCCCTCTAGTGTTTGTTAAAAGAAGTAGCATAAAGAAAAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTCCCTCTAGTGTTTGTTAAAAGAAGTAGCATAAAGAAAAATTTT  500

seq1  TAAAAAGTGAGCATGGTGACAGGTCTTTAATCTGAGCACTCAGGAAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTGAGCATGGTGACAGGTCTTTAATCTGAGCACTCAGGAAACAG  550

seq1  AGGCAGGCTGTTCTCTGTGATTTCAAGTCCATCCTGGTCTTTGTATCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCTGTTCTCTGTGATTTCAAGTCCATCCTGGTCTTTGTATCAAG  600

seq1  CTCTAAGCTAGTCAAAGCTACATACAGTGAGAACTTGTCTCAAAAATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGCTAGTCAAAGCTACATACAGTGAGAACTTGTCTCAAAAATGCA  650

seq1  ATCAAATACAATCCAAACAACCAAACCCTTCATCTCTCAATCAAAAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATACAATCCAAACAACCAAACCCTTCATCTCTCAATCAAAAAATT  700

seq1  CCTATAAAAATCTAAAGTACCCACTAGGATAAAAATAATAAACTGTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAAAATCTAAAGTACCCACTAGGATAAAAATAATAAACTGTTTTA  750

seq1  CTTCAGTAATTTTAAATTATATGAAAACATAAAATATTATTATACCATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTAATTTTAAATTATATGAAAACATAAAATATTATTATACCATAC  800

seq1  TATAGTACATTTGAGAAAGTTAAAACTAAAGTATGAATAATATATCTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTACATTTGAGAAAGTTAAAACTAAAGTATGAATAATATATCTGAC  850

seq1  ACAAATGTACATTCATGAAATAAAGAAAAATACTATTTTTATATTCTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTACATTCATGAAATAAAGAAAAATACTATTTTTATATTCTCTT  900

seq1  TGTTTTAACAAGTATTACTTTATTTACAATTTAGGTATATATTATTAACC  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTTTTAACAAGTATTACTTTATTTACAATTTA-GTATATATTATTAACC  949

seq1  TATAAATATAAAAGTCATAATGATAATGTTTAAAATAACTTCCAAGATTC  1000
      ||||||||| ||||||||||||||||||||||||   |||||| ||||||
seq2  TATAAATAT-AAAGTCATAATGATAATGTTTAAA--TACTTCC-AGATTC  995

seq1  AGAGCTGTTAAATAATAAAAATTTCAATCTGGACAATTCCAATATGAATA  1050
      |||||||||||||||| |||||||| |||||||| ||||| ||||| |||
seq2  AGAGCTGTTAAATAAT-AAAATTTC-ATCTGGAC-ATTCC-ATATG-ATA  1040

seq1  CCTGTTTTATGGAAATAATATTAAGAATAGAAAAATGAAGCTGTGGACAT  1100
      |   ||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGTTTTTATGGAAATAATATTAAGAATAGAAAAATGAAGCTGTGGACA-  1089

seq1  TTTTGGAATAAGGAGAGGTAAACCAGAAATATAA  1134
      ||||||||||    || ||||||| |||||||||
seq2  TTTTGGAATA---GGAAGTAAACC-GAAATATAA  1119