BAC Information

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BAC

Clone NameB6Ng01-271B09
Chromosome15 (Build37)Y (Build37)
Map Location 69,529,802 - 69,530,9661,819,046 - 1,819,254
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG665945, EG633752, Khdrbs3
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271B09.bB6Ng01-271B09.g
ACCGA073261GA073262
length1,158329
definitionB6Ng01-271B09.b B6Ng01-271B09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(69,529,802 - 69,530,966)(1,819,046 - 1,819,254)
sequence
gaattctacatttgctgctatcctcaaatctccatcaggtccttgacccc
agttacactttaaatggtttaaacagggacagaagactacaggcgtgggc
acttaggcatatgggagattcctagcaatgatattgaatattgccaggat
tattttaagtacattctttttcaatgtcaaatagatgtaagcaagggcca
tcttgcccacctggcagaattatgcttttctcaagaagaggactggagac
cttaggcaggctaggacttaatcttggttggaagcctgatctgccctctt
gatctgcctgtaataggtatatactttagaaacagtgtctaatatctgat
atctagcatggtatattttgcttgtttctaataggcctggttagcagatt
atctgtcaagtcttttggaatcaacccccctttaattaaattctacctca
tgtgcctttaaatcttctaagtaaatttactagtaaatcctttgtaacat
caatttatgactttgagttccttatatatcaataatattagccaaatacc
catataggtactagttattccatgatttaatcagagcttggctttggtta
tattaaagtcactaggatttaacaaattctgtgtactgtagagatgctca
gtgattgagagcatgtgctgttgttacagaatacacaaatttgcttttca
gaggacctgagttctgtttctggagatcatatttggtggcactaagccac
ctgtaactccagctctacaggacctaatatcttctttttggtttctaagg
ctagatgaacaaatgtgtacatattcacacacaactaaatataaagaaaa
tcttaacaaagagacaaaaacaaattttggatgtgtattaaatatagttt
tacgtatatgtgtggagccactgaaatctgagggctattttctgtcacag
ctttccatagcccattgttacaacaagataagaaatgtaatttgtggata
aatatgattattaacctacatatgcaaacccaggactccagtttggaatg
ggtattcatttcatcattttttttaaaattaataactaaaatatctataa
tagctttctcgagaaatccattctgtagtatctggttctatgaatgacat
atttactg

aaatggtagaggtagatatattggtagatgagaaagagagagagagagag
agagagagagagagaatatttgtgaatataatccaagtatttagtccttg
ttatctaataagattaactaaaggatgggccatctagtgattgccatatc
cagggatccatcccataatcagcttccaaacgctgacaccattgcataca
ctagcaagattttgctgtaaggacccagatatagctgtctcttgtgagac
tatgccggggcctagcaaacacagaagtggatgatcacagtcagctattg
gatgggtcacacggcccccaatggaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_69529802_69530966
seq2: B6Ng01-271B09.b_45_1202

seq1  GAATTCTACATTTGCTGCTATCCTCAAATCTCCATCAGGTCCTTGACCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATTTGCTGCTATCCTCAAATCTCCATCAGGTCCTTGACCCC  50

seq1  AGTTACACTTTAAATGGTTTAAACAGGGACAGAAGACTACAGGCGTGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACACTTTAAATGGTTTAAACAGGGACAGAAGACTACAGGCGTGGGC  100

seq1  ACTTAGGCATATGGGAGATTCCTAGCAATGATATTGAATATTGCCAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGCATATGGGAGATTCCTAGCAATGATATTGAATATTGCCAGGAT  150

seq1  TATTTTAAGTACATTCTTTTTCAATGTCAAATAGATGTAAGCAAGGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAGTACATTCTTTTTCAATGTCAAATAGATGTAAGCAAGGGCCA  200

seq1  TCTTGCCCACCTGGCAGAATTATGCTTTTCTCAAGAAGAGGACTGGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCCACCTGGCAGAATTATGCTTTTCTCAAGAAGAGGACTGGAGAC  250

seq1  CTTAGGCAGGCTAGGACTTAATCTTGGTTGGAAGCCTGATCTGCCCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCAGGCTAGGACTTAATCTTGGTTGGAAGCCTGATCTGCCCTCTT  300

seq1  GATCTGCCTGTAATAGGTATATACTTTAGAAACAGTGTCTAATATCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCCTGTAATAGGTATATACTTTAGAAACAGTGTCTAATATCTGAT  350

seq1  ATCTAGCATGGTATATTTTGCTTGTTTCTAATAGGCCTGGTTAGCAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCATGGTATATTTTGCTTGTTTCTAATAGGCCTGGTTAGCAGATT  400

seq1  ATCTGTCAAGTCTTTTGGAATCAACCCCCCTTTAATTAAATTCTACCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCAAGTCTTTTGGAATCAACCCCCCTTTAATTAAATTCTACCTCA  450

seq1  TGTGCCTTTAAATCTTCTAAGTAAATTTACTAGTAAATCCTTTGTAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTTTAAATCTTCTAAGTAAATTTACTAGTAAATCCTTTGTAACAT  500

seq1  CAATTTATGACTTTGAGTTCCTTATATATCAATAATATTAGCCAAATACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTATGACTTTGAGTTCCTTATATATCAATAATATTAGCCAAATACC  550

seq1  CATATAGGTACTAGTTATTCCATGATTTAATCAGAGCTTGGCTTTGGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGGTACTAGTTATTCCATGATTTAATCAGAGCTTGGCTTTGGTTA  600

seq1  TATTAAAGTCACTAGGATTTAACAAATTCTGTGTACTGTAGAGATGCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGTCACTAGGATTTAACAAATTCTGTGTACTGTAGAGATGCTCA  650

seq1  GTGATTGAGAGCATGTGCTGTTGTTACAGAATACACAAATTTGCTTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGAGAGCATGTGCTGTTGTTACAGAATACACAAATTTGCTTTTCA  700

seq1  GAGGACCTGAGTTCTGTTTCTGGAGATCATATTTGGTGGCACTAAGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCTGAGTTCTGTTTCTGGAGATCATATTTGGTGGCACTAAGCCAC  750

seq1  CTGTAACTCCAGCTCTACAGGACCTAATATCTTCTTTTTGGTTTCTAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACTCCAGCTCTACAGGACCTAATATCTTCTTTTTGGTTTCTAAGG  800

seq1  CTAGATGAACAAATGTGTACATATTCACACACAACTAAATATAAAGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGAACAAATGTGTACATATTCACACACAACTAAATATAAAGAAAA  850

seq1  TCTTAACAAAGAGACAAAAACAAATTTTGGATGTGTATTAAATATAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACAAAGAGACAAAAACAAATTTTGGATGTGTATTAAATATAGTTT  900

seq1  TACGTATATGTGTGGAGCCACTGAAATCTGAGGGCTATTTTCTGTCACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTATATGTGTGGAGCCACTGAAATCTGAGGGCTATTTTCTGTCACAG  950

seq1  CTTTCCATAGCCCATTGTTACAACAAGATAAGAAATGTAATTTGTGGATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATAGCCCATTGTTACAACAAGATAAGAAATGTAATTTGTGGATA  1000

seq1  AATATGATTATTAACCTACATATTGCAAAACCCAGGACTCCAGTTTGGAA  1050
      |||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  AATATGATTATTAACCTACATA-TGC-AAACCCAGGACTCCAGTTTGGAA  1048

seq1  TGGGTATTCATTTCATCATTTTTTTTAAAATTAATAACT-AAATATCTAT  1099
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  TGGGTATTCATTTCATCATTTTTTTTAAAATTAATAACTAAAATATCTA-  1097

seq1  TAATAGCTTTCTCCGAGGAATCCATTCTGTTAGTTATCTGGGTCTATGAT  1149
      |||||||||||| |||| ||||||||||| ||| ||||||| ||||||| 
seq2  TAATAGCTTTCT-CGAGAAATCCATTCTG-TAG-TATCTGGTTCTATGAA  1144

seq1  TGACATAATTTTACTG  1165
      |||||||  |||||||
seq2  TGACATA--TTTACTG  1158


seq1: chrY_1819046_1819254
seq2: B6Ng01-271B09.g_191_400

seq1  AAAGGATGGACCATCTAGTGATTGCCATATGCAGGGATCCATCCCATAAT  50
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  AAAGGATGGGCCATCTAGTGATTGCCATATCCAGGGATCCATCCCATAAT  50

seq1  CAGCTTCCAAATGCTGACACCATTGCATACACTAGCAAGATTTTGCTGAA  100
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  CAGCTTCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTGCTGTA  100

seq1  AGGACCCAGATATAGCTCTCTCTTGTGAGACTATGCAGGGGCCTA-CAAA  149
      ||||||||||||||||| |||||||||||||||||| |||||||| ||||
seq2  AGGACCCAGATATAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAA  150

seq1  CACAGAAGTGGATGATCACAGTCAGCTATTGGATGGGTCACACAGCCCCC  199
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CACAGAAGTGGATGATCACAGTCAGCTATTGGATGGGTCACACGGCCCCC  200

seq1  AATGGAGGAG  209
      ||||||||||
seq2  AATGGAGGAG  210


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