BAC Information

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BAC

Clone NameB6Ng01-273E05
ChromosomeY (Build37)12 (Build37)
Map Location 1,233,350 - 1,234,46666,624,910 - 66,624,969
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneJarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273E05.bB6Ng01-273E05.g
ACCGA074881GA074882
length1,108968
definitionB6Ng01-273E05.b B6Ng01-273E05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,233,350 - 1,234,466)(66,624,910 - 66,624,969)
sequence
gaattccttcatctgctgatggtgtctttatcttgaaattgtttcatgct
cctgaaacagaagtcacacaaaatatgcttcattatatactagccaatca
gtgtcattctcttgacaatacaacatgtatgattatgcctcagaatcatg
agcaaccaggccatatgggaaaaataattaggctatttgtgctgactgaa
gatgggatgggttcagtgttatcatgtgttctcttcatgaaagtaagcag
catagaaggtgagtatagatcaaagaggtacagcccaggagggactcagc
catctactgttggccttagggatctaaggggtcactaggtaagggatcct
taggaagagtgccagccactgcttttagctaatggtaccatttttagaac
caccattttctaggacttaaaagaaaacagtattactgtaatttactaag
tctggagtcatttgatagatacatcagtggtcatcaacaaggtgtaaagg
tgaggacacaggttaggggactgggaagaagaagcctgttcttggaacat
ccttttccttcaagggatggagacttctgcacagcaacactggacaaaaa
atctacatcgataagggtatccccagtgtttccagattagtggttttcaa
accatgggttgaccagattaaaggatcacaacatttggaagactgaggac
cactagtcctgacccctctaaagcatgcctgccagtatggtctggaggaa
taattccctttattcaataagacaaactcagaaaaatcaaaacatcaaaa
aattatgaaaattaaacagctcttgggccacagtctataagtaggacatg
ctgacattaggagaatgaagtcaaaatggaaatcactgtcacaccatgac
cattccccaaatgagaagcagagggaaaaaatcagtttccctggtggaga
tataaggaggaaaccattgtcagatcaccagcaaggattttaaataccgc
cctaatgtatgtatttagattagtgagaaacttcaaaaccaaaggaaatg
caaattcttgttgaagagttgagaacaagaaatagcaaagggaattcagc
caataaaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttctcca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcagcagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaatttctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattaaccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
ttggaggagctagagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1233350_1234466
seq2: B6Ng01-273E05.b_45_1152

seq1  GAATTCCTTCATCTGCTGATGGTGTCTTTATCTTGAAATTGTTTCATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCATCTGCTGATGGTGTCTTTATCTTGAAATTGTTTCATGCT  50

seq1  CCTGAAACAGAAGTCACACAAAATATGCTTCATTATATACTAGCCAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAACAGAAGTCACACAAAATATGCTTCATTATATACTAGCCAATCA  100

seq1  GTGTCATTCTCTTGACAATACAACATGTATGATTATGCCTCAGAATCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATTCTCTTGACAATACAACATGTATGATTATGCCTCAGAATCATG  150

seq1  AGCAACCAGGCCATATGGGAAAAATAATTAGGCTATTTGTGCTGACTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCAGGCCATATGGGAAAAATAATTAGGCTATTTGTGCTGACTGAA  200

seq1  GATGGGATGGGTTCAGTGTTATCATGTGTTCTCTTCATGAAAGTAAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGATGGGTTCAGTGTTATCATGTGTTCTCTTCATGAAAGTAAGCAG  250

seq1  CATAGAAGGTGAGTATAGATCAAAGAGGTACAGCCCAGGAGGGACTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGGTGAGTATAGATCAAAGAGGTACAGCCCAGGAGGGACTCAGC  300

seq1  CATCTACTGTTGGCCTTAGGGATCTAAGGGGTCACTAGGTAAGGGATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACTGTTGGCCTTAGGGATCTAAGGGGTCACTAGGTAAGGGATCCT  350

seq1  TAGGAAGAGTGCCAGCCACTGCTTTTAGCTAATGGTACCATTTTTAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGAGTGCCAGCCACTGCTTTTAGCTAATGGTACCATTTTTAGAAC  400

seq1  CACCATTTTCTAGGACTTAAAAGAAAACAGTATTACTGTAATTTACTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTTCTAGGACTTAAAAGAAAACAGTATTACTGTAATTTACTAAG  450

seq1  TCTGGAGTCATTTGATAGATACATCAGTGGTCATCAACAAGGTGTAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTCATTTGATAGATACATCAGTGGTCATCAACAAGGTGTAAAGG  500

seq1  TGAGGACACAGGTTAGGGGACTGGGAAGAAGAAGCCTGTTCTTGGAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACACAGGTTAGGGGACTGGGAAGAAGAAGCCTGTTCTTGGAACAT  550

seq1  CCTTTTCCTTCAAGGGATGGAGACTTCTGCACAGCAACACTGGACAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCTTCAAGGGATGGAGACTTCTGCACAGCAACACTGGACAAAAA  600

seq1  ATCTACATCGATAAGGGTATCCCCAGTGTTTCCAGATTAGTGGTTTTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACATCGATAAGGGTATCCCCAGTGTTTCCAGATTAGTGGTTTTCAA  650

seq1  ACCATGGGTTGACCAGATTAAAGGATCACAACATTTGGAAGACTGAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGGTTGACCAGATTAAAGGATCACAACATTTGGAAGACTGAGGAC  700

seq1  CACTAGTCCTGACCCCTCTAAAGCATGCCTGCCAGTATGGTCTGGAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTCCTGACCCCTCTAAAGCATGCCTGCCAGTATGGTCTGGAGGAA  750

seq1  TAATTCCCTTTATTCAATAAGACAAACTCAGAAAAATCAAAACATCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCCTTTATTCAATAAGACAAACTCAGAAAAATCAAAACATCAAAA  800

seq1  AATTATGAAAATTAAACAGCTCTTGGGCCACAGTCTATAAGTAGGACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGAAAATTAAACAGCTCTTGGGCCACAGTCTATAAGTAGGACATG  850

seq1  CTGACATTAGGAGAATGAAGTCAAAATGGAAATCACTGTCACACCATGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATTAGGAGAATGAAGTCAAAATGGAAATCACTGTCACACCATGAC  900

seq1  CATTCCCCAAATGAGAAGCAGAGGGAAAAAATCAG-TTCCCTGGTGGAGA  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATTCCCCAAATGAGAAGCAGAGGGAAAAAATCAGTTTCCCTGGTGGAGA  950

seq1  TATAAGGAGGAAACCATTGTCAGAATCACCAGCAAGGATTTTAAATACCG  999
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  TATAAGGAGGAAACCATTGTCAG-ATCACCAGCAAGGATTTTAAATACC-  998

seq1  GCCCTAATGTATGTATTTAAGATTAGGTGAGAAACTTCCAAAACAAAAGG  1049
      |||||||||||||||||| |||||| ||||||||||| |||||| |||||
seq2  GCCCTAATGTATGTATTT-AGATTA-GTGAGAAACTT-CAAAACCAAAGG  1045

seq1  AAATGCAAAATCTTGATGAAGAAGTTGGAGAAACAAGAAAAAAGCAAAGG  1099
      ||||||||| ||||| ||||| |||| ||| |||||| ||| |||||| |
seq2  AAATGCAAATTCTTGTTGAAG-AGTT-GAG-AACAAG-AAATAGCAAA-G  1090

seq1  GGAATTCAGCAAATAAAA  1117
      |||||||||| |||||||
seq2  GGAATTCAGCCAATAAAA  1108

seq1: chr12_66624910_66624969
seq2: B6Ng01-273E05.g_761_820

seq1  GGAAGAAAACACCCTTGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAG  50
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAG  50

seq1  ATGAAAGGAT  60
      ||||||||||
seq2  ATGAAAGGAT  60