BAC Information

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BAC

Clone NameB6Ng01-275H13
Chromosome4 (Build37)Y (Build37)
Map Location 30,989,844 - 30,990,9242,652,209 - 2,652,251
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665185, LOC619906, LOC100040864
Downstream geneLOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275H13.bB6Ng01-275H13.g
ACCGA076501GA076502
length1,080220
definitionB6Ng01-275H13.b B6Ng01-275H13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,989,844 - 30,990,924)(2,652,209 - 2,652,251)
sequence
gaattcttcgattaccttcctaaagattcacatggcttctgaagtgtata
ggcttgggtcatgtcttttgacacattcgccaagttttgcctcttccttc
atcaaattcactcagtcactgtgctctgtgctgtaccaggataatgaaca
ggctaaaagttcataacttattgcagtgcttttggatgctgctccttaag
ttaatttattttctgaatgctcagatagcataaattatcttgattcacct
tcatcttcattcgttcttcttcttattatttatttttattgtaaagatga
taatgattatttacaatccagctgttacccatctcccactccccctccca
cagttccttatctcattcctccttccctctgtctctgagaggatgctttc
ccacccccaggatgttcctggggcttcaagtctctagaatgttaaataca
tcttctctcactgaggccagaccaggaagttctattcagtatgttcctaa
tcttgtttactcaacaatattctcttatttttgtattagttggctttcta
tcttcacaatgaatacataaggtgataattttatactttaacaccccact
ctcagcaatggacagatcatggaaacagaaactaaacagagacacagtga
aactaacagaagttatagaccaaatggatataacagatatttatagaaca
tttcatcctcaagcaaaagaaacaccttcttcacagcacctaatggtacc
ttctccaaaactgaccgtataattagccacaaaacaggcctcaacagata
caagaagatggcagttatcccatgcaccctatcagatcaccacggacaaa
ggatgttctcaaattttgaacaaaaaaacaactgaaaacacgcatacaca
tggaaagtgaacaacactctactcaatgataacttgggtcaaggaagaaa
tggagaaattaaagacattttagaatttaatgaaaatgaagacacatcat
atgaaaacttatgggacacaatgaaagcagtgatagaggaaaattcatag
ctctaagtgccccaaaaataaactggagag

tttatctatctgtgtattcatcatttgtcagatcatagctggaaatgatt
ctattatatgctgtgggtttctttttgtttctttaacattgcagcagctt
ttttagttgtatgaagtactagttgttatttagtcttaatttttgggcaa
aggaagtactattcagaaagacctttctagggttagggttagggttaggg
ttagggttagggttagggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_30989844_30990924
seq2: B6Ng01-275H13.b_42_1121

seq1  GAATTCTTCGATTACCTTCCTAAAGATTCACATGGCTTCTGAAGTGTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGATTACCTTCCTAAAGATTCACATGGCTTCTGAAGTGTATA  50

seq1  GGCTTGGGTCATGTCTTTTGACACATTCGCCAAGTTTTGCCTCTTCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGGTCATGTCTTTTGACACATTCGCCAAGTTTTGCCTCTTCCTTC  100

seq1  ATCAAATTCACTCAGTCACTGTGCTCTGTGCTGTACCAGGATAATGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTCACTCAGTCACTGTGCTCTGTGCTGTACCAGGATAATGAACA  150

seq1  GGCTAAAAGTTCATAACTTATTGCAGTGCTTTTGGATGCTGCTCCTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAAGTTCATAACTTATTGCAGTGCTTTTGGATGCTGCTCCTTAAG  200

seq1  TTAATTTATTTTCTGAATGCTCAGATAGCATAAATTATCTTGATTCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTATTTTCTGAATGCTCAGATAGCATAAATTATCTTGATTCACCT  250

seq1  TCATCTTCATTCGTTCTTCTTCTTATTATTTATTTTTATTGTAAAGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCATTCGTTCTTCTTCTTATTATTTATTTTTATTGTAAAGATGA  300

seq1  TAATGATTATTTACAATCCAGCTGTTACCCATCTCCCACTCCCCCTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATTATTTACAATCCAGCTGTTACCCATCTCCCACTCCCCCTCCCA  350

seq1  CAGTTCCTTATCTCATTCCTCCTTCCCTCTGTCTCTGAGAGGATGCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCTTATCTCATTCCTCCTTCCCTCTGTCTCTGAGAGGATGCTTTC  400

seq1  CCACCCCCAGGATGTTCCTGGGGCTTCAAGTCTCTAGAATGTTAAATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCAGGATGTTCCTGGGGCTTCAAGTCTCTAGAATGTTAAATACA  450

seq1  TCTTCTCTCACTGAGGCCAGACCAGGAAGTTCTATTCAGTATGTTCCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTCACTGAGGCCAGACCAGGAAGTTCTATTCAGTATGTTCCTAA  500

seq1  TCTTGTTTACTCAACAATATTCTCTTATTTTTGTATTAGTTGGCTTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTACTCAACAATATTCTCTTATTTTTGTATTAGTTGGCTTTCTA  550

seq1  TCTTCACAATGAATACATAAGGTGATAATTTTATACTTTAACACCCCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAATGAATACATAAGGTGATAATTTTATACTTTAACACCCCACT  600

seq1  CTCAGCAATGGACAGATCATGGAAACAGAAACTAAACAGAGACACAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAATGGACAGATCATGGAAACAGAAACTAAACAGAGACACAGTGA  650

seq1  AACTAACAGAAGTTATAGACCAAATGGATATAACAGATATTTATAGAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACAGAAGTTATAGACCAAATGGATATAACAGATATTTATAGAACA  700

seq1  TTTCATCCTCAAGCAAAAGAAACACCTTCTTCACAGCACCTAATGGTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCCTCAAGCAAAAGAAACACCTTCTTCACAGCACCTAATGGTACC  750

seq1  TTCTCCAAAACTGACCGTATAATTAGCCACAAAACAGGCCTCAACAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAAAACTGACCGTATAATTAGCCACAAAACAGGCCTCAACAGATA  800

seq1  CAAGAAGATGGCAGTTATCCCATGCACCCTATCAGATCACCACGGACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGATGGCAGTTATCCCATGCACCCTATCAGATCACCACGGACAAA  850

seq1  GGATGTTCTCAAATTTTGAACAAAAAAACAACTGAAAACACGCATACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTCTCAAATTTTGAACAAAAAAACAACTGAAAACACGCATACACA  900

seq1  TGGAAAGTGAACAACACTCTACTCAATGATAACTT-GGTCAAGGAAGAAA  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGAAAGTGAACAACACTCTACTCAATGATAACTTGGGTCAAGGAAGAAA  950

seq1  TGGAGAAATTAAAGACATTTTAGAATTTAATGAAAATGAAGACACATCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAATTAAAGACATTTTAGAATTTAATGAAAATGAAGACACATCAT  1000

seq1  ATGAAAACTTATGGGACACAATGAAAGCAGTGATAAGAGGAAAATTCATA  1049
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGAAAACTTATGGGACACAATGAAAGCAGTGAT-AGAGGAAAATTCATA  1049

seq1  GCTCTAAGTGCCCCCAAAAATAAACTGGAGAG  1081
      |||||||||| |||||||||||||||||||||
seq2  GCTCTAAGTG-CCCCAAAAATAAACTGGAGAG  1080


seq1: chrY_2652209_2652251
seq2: B6Ng01-275H13.g_246_288 (reverse)

seq1  AACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTA  43
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTA  43


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