BAC Information

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BAC

Clone NameB6Ng01-288G08
ChromosomeY (Build37)6 (Build37)
Map Location 1,982,503 - 1,982,55135,515,505 - 35,516,640
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840
Downstream geneLOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288G08.bB6Ng01-288G08.g
ACCGA086068GA086069
length581,147
definitionB6Ng01-288G08.b B6Ng01-288G08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,982,503 - 1,982,551)(35,515,505 - 35,516,640)
sequence
gaattcatctttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtg
gaattccactccaaccttaaatttatgccaaaagtggaattcttacagat
gagtctggcaagcatggagtagagtagaatggagtacagagctccaacat
caagtctatccatgtctctccctctctttttctctccccctccaattagt
gacttttgtttctttggtttggtttgtttgattgattgattgattgactg
actgattgattgattgatatgtttgttgtctgagacaaagtttactctgt
aaccccagctgaactggattcaattcactatgtatgttactatgtctcag
gatatggcaatcctcctgcctcagcctcctaagttctaggattacagtac
tgaactgctacatctgcttccatttctcaaaaagcaaatcttacccatgg
atgagaaagagtattattctacacctgaataatctgaagaaaagctgccg
cacatgctgtttcaatctgggtaaagacttttcagcatgcctacttccat
aaactagactataaactggactgagaaggtggctcagcaggtaaaaagca
gtagccatgtaagcctgatgacctgggttcaatcctaggactgaagttga
atgtgaggacacacattaccctcagcactcctagagtgagatgggagctg
gatacaaggcagtcagtcacctagaagttcacaggccagctagaatgtag
gcggtgcggcagcagaaacaaagagaccaaagctaacagggtgcaatggg
aaaactgactccgaaaagtcctctgacctccacacagatactgcggcatg
agtgcagacacacacacacacacatgcacacacatacacacacacacaca
cacacacacacacacactcacatacacaaagggacctccccatgggtact
atggcatgagtgtagacacacccaccccagatactctaccatacacagac
acactggacgcagattcacactaaaaacttttttagcttttaaatgaatg
caaaccttaagaagggtaaagaaaactcaatttgttttatattaatagca
acagaagtcaactcattaggtttccattgtcaactactcccaaagggaat
actgggctcaaagtttaattggattcaagcaatatcaatacatacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1982503_1982551
seq2: B6Ng01-288G08.b_56_104

seq1  TTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  49
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  49

seq1: chr6_35515505_35516640
seq2: B6Ng01-288G08.g_71_1217 (reverse)

seq1  TAGTATGTATTGAT-CTACTTGAACCCAATTAA--CTTGAGCCCAGTTTC  47
      ||||||||||||||  | |||||| ||||||||   ||||||||||| | 
seq2  TAGTATGTATTGATATTGCTTGAATCCAATTAAACTTTGAGCCCAGTATT  50

seq1  CCCTTTGGGAGATGTTGACATTTGAAA-CTAATGAGTTGACTTCTGTTGC  96
      |||||||||||  ||||||| | |||| ||||||||||||||||||||||
seq2  CCCTTTGGGAGTAGTTGACAATGGAAACCTAATGAGTTGACTTCTGTTGC  100

seq1  TA-TAATAT-AAACAAA-TGAGTTTTCTTTA-CCTTCTT-AGGTTTGCAT  141
      || |||||| ||||||| ||||||||||||| ||||||| ||||||||||
seq2  TATTAATATAAAACAAATTGAGTTTTCTTTACCCTTCTTAAGGTTTGCAT  150

seq1  TCTTTAAAAAAGCT-AAAAAGTTTTTAGTGTGTATCTGTGT-CTGTGTGT  189
      || ||  ||||||| ||||||||||||||||| ||||| || | ||||||
seq2  TCATT-TAAAAGCTAAAAAAGTTTTTAGTGTGAATCTGCGTCCAGTGTGT  199

seq1  CTGTGTAT-GTTGTGTATCTGTGTGTGGGTGTGTCTACACTCATGCCATA  238
      |||||||| || | ||||||| | ||||||||||||||||||||||||||
seq2  CTGTGTATGGTAGAGTATCTG-GGGTGGGTGTGTCTACACTCATGCCATA  248

seq1  GTACCCATGGGGAGGT-CCTTTGTGTATGTGTGTGTGTGTGTGTGTGTGT  287
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  GTACCCATGGGGAGGTCCCTTTGTGTATGTGAGTGTGTGTGTGTGTGTGT  298

seq1  GTGTGTGTGTGTGTATGTGTGTGCATGTGTGTGTGTGTGTGTCTGCACTC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTATGTGTGTGCATGTGTGTGTGTGTGTGTCTGCACTC  348

seq1  ATGCCGCAGTATCTGTGTGGAGGTCAGAGGACTTTTCGGAGTCAGTTTTC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCGCAGTATCTGTGTGGAGGTCAGAGGACTTTTCGGAGTCAGTTTTC  398

seq1  CCATTGCACCCTGTTAGCTTTGGTCTCTTTGTTTCTGCTGCCGCACCGCC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCACCCTGTTAGCTTTGGTCTCTTTGTTTCTGCTGCCGCACCGCC  448

seq1  TACATTCTAGCTGGCCTGTGAACTTCTAGGTGACTGACTGCCTTGTATCC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCTAGCTGGCCTGTGAACTTCTAGGTGACTGACTGCCTTGTATCC  498

seq1  AGCTCCCATCTCACTCTAGGAGTGCTGAGGGTAATGTGTGTCCTCACATT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCATCTCACTCTAGGAGTGCTGAGGGTAATGTGTGTCCTCACATT  548

seq1  CAACTTCAGTCCTAGGATTGAACCCAGGTCATCAGGCTTACATGGCTACT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCAGTCCTAGGATTGAACCCAGGTCATCAGGCTTACATGGCTACT  598

seq1  GCTTTTTACCTGCTGAGCCACCTTCTCAGTCCAGTTTATAGTCTAGTTTA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTACCTGCTGAGCCACCTTCTCAGTCCAGTTTATAGTCTAGTTTA  648

seq1  TGGAAGTAGGCATGCTGAAAAGTCTTTACCCAGATTGAAACAGCATGTGC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTAGGCATGCTGAAAAGTCTTTACCCAGATTGAAACAGCATGTGC  698

seq1  GGCAGCTTTTCTTCAGATTATTCAGGTGTAGAATAATACTCTTTCTCATC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTTTTCTTCAGATTATTCAGGTGTAGAATAATACTCTTTCTCATC  748

seq1  CATGGGTAAGATTTGCTTTTTGAGAAATGGAAGCAGATGTAGCAGTTCAG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTAAGATTTGCTTTTTGAGAAATGGAAGCAGATGTAGCAGTTCAG  798

seq1  TACTGTAATCCTAGAACTTAGGAGGCTGAGGCAGGAGGATTGCCATATCC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAATCCTAGAACTTAGGAGGCTGAGGCAGGAGGATTGCCATATCC  848

seq1  TGAGACATAGTAACATACATAGTGAATTGAATCCAGTTCAGCTGGGGTTA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATAGTAACATACATAGTGAATTGAATCCAGTTCAGCTGGGGTTA  898

seq1  CAGAGTAAACTTTGTCTCAGACAACAAACATATCAATCAATCAATCAGTC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAAACTTTGTCTCAGACAACAAACATATCAATCAATCAATCAGTC  948

seq1  AGTCAATCAATCAATCAATCAAACAAACCAAACCAAAGAAACAAAAGTCA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATCAATCAATCAATCAAACAAACCAAACCAAAGAAACAAAAGTCA  998

seq1  CTAATTGGAGGGGGAGAGAAAAAGAGAGGGAGAGACATGGATAGACTTGA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGGAGGGGGAGAGAAAAAGAGAGGGAGAGACATGGATAGACTTGA  1048

seq1  TGTTGGAGCTCTGTACTCCATTCTACTCTACTCCATGCTTGCCAGACTCA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAGCTCTGTACTCCATTCTACTCTACTCCATGCTTGCCAGACTCA  1098

seq1  TCTGTAAGAATTCCACTTTTGGCATAAATTTAAGGTTGGAGTGGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGAATTCCACTTTTGGCATAAATTTAAGGTTGGAGTGGAATTC  1147