gaattctatatttccaaactgccaatgtcactcactctcaatgaaatata
tagaaaccatagagctgtattaatgggctctgcactgtgttctgcctggg
tatttcaattgtttgtttgtttgtctgtttgttttttcagcctgaggggc
ctgaatatgtagttatttcttgggaacattataatgagtgttttacctaa
aattaaatttcctatgtgccctaataattgtcaacttgataagatctaat
atccctaaaagacaggtctttgtcatgtcagcaagtgaatttataaattg
agttgagttgggaggataacatggctccttctactttaatatttatagac
tatattgcacatatgcattgctgcgtggcttgattttctccttttataat
tgcattgtaaaaaaaaaaaacacaaaaaacaaaacattctcactagctag
tggttacagaaagagcacttaacaccacgagaatagttacaattcataga
gttggtatttttatttggtattcttggttttcaagtggagcaaaatctga
cattaaccatgtggacaattttcaagatgagaaagaggtgaggggctgaa
ttcttaactctaaagtggtatataattatttcattgcattgagtgaatta
caggaaaatgaaacacatactctatcttgtactgtgagaatgttctacta
gccttaagctctacttcttatggttctgccatgctggagatatgtggaaa
ttatttagtagaaaagaaaacatcagtactgtgtgttactttccttacta
catgttgaaatgagtgcagaggcaacctcatcgctaccaaaatgatatcc
aagagctacctggattactgtggtactttctgctcactcacatccttaac
attccctacaacactttatcttttctccacactcacttttcctggcagat
aagctccatgtacttttttctgaagcacagactctctacctttgtgattt
gatagaaactgtctgctgcaagcttagaaagaaagcaataattcctatca
taggtttaaataatgtctcccacctggtttagaaaggctgtggtgatttt
aagaagtagactagctgataaagtgttatcact

gaattctttgtttaactctgtaccccatttttaatggggctatttgaatt
tctggagtccagcttcttgaactctttgtatatattggatattagtctcc
tatcagtttaggattggtaaaaatactttctcaatctatttgtgttcttt
ttgtcttattgacagtatcttttgccttacagaagctttgcaatttattg
tggtcccatttgttgattcttgccctgtgcccatatcttcgagcctcccc
ccacctttctccactataaatttcagtgtctcttgttttatgtggagttc
tttgatccacaatatgaactaaccaacaccgccagagctcgtgtttctag
ctgcatatgtagcagaagatggactattgggccatcattgggaagaaagg
ccccttggtcttggaaactttatatgccccagtacaggggaatgccaggg
ccaagaaattttgagtggtaggggagcagagcagggataggatacagggg
aattttggaataacatttgaaatgtaaatgaagaaaataatctaataaaa
aattgaagaaaaaaaaaaaagaagagaaatgttcaaaatgcttagtcatc
agggaaatgtaaatcaaaacaaccctgagattccacctcacgccaggtaa
aatggctaagatcaaaaattcaggtgacagcagatgctggtgaagaggtg
gagaaaaaacactctttcattgctggtgggattgcaagctagtccaacca
ctccggaaatcagtctggcagtttctcagaaaatcggatacattgtactt
ccagatgatacattaatacctctcctgggcatgtacccagaagaagttcc
atctgattattaaaggacacatgctccactatgttcatagcagccttatt
tataatagccagaaacctggaaag

seq1: chr1_104256127_104257264
seq2: B6Ng01-289I01.b_45_1177

seq1  GAATTCTATATTTCCAAACTGCCAATGTCACTCACTCTCAATGAAATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATTTCCAAACTGCCAATGTCACTCACTCTCAATGAAATATA  50

seq1  TAGAAACCATAGAGCTGTATTAATGGGCTCTGCACTGTGTTCTGCCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACCATAGAGCTGTATTAATGGGCTCTGCACTGTGTTCTGCCTGGG  100

seq1  TATTTCAATTGTTTGTTTGTTTGTCTGTTTGTTTTTTCAGCCTGAGGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAATTGTTTGTTTGTTTGTCTGTTTGTTTTTTCAGCCTGAGGGGC  150

seq1  CTGAATATGTAGTTATTTCTTGGGAACATTATAATGAGTGTTTTACCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATATGTAGTTATTTCTTGGGAACATTATAATGAGTGTTTTACCTAA  200

seq1  AATTAAATTTCCTATGTGCCCTAATAATTGTCAACTTGATAAGATCTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATTTCCTATGTGCCCTAATAATTGTCAACTTGATAAGATCTAAT  250

seq1  ATCCCTAAAAGACAGGTCTTTGTCATGTCAGCAAGTGAATTTATAAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTAAAAGACAGGTCTTTGTCATGTCAGCAAGTGAATTTATAAATTG  300

seq1  AGTTGAGTTGGGAGGATAACATGGCTCCTTCTACTTTAATATTTATAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGTTGGGAGGATAACATGGCTCCTTCTACTTTAATATTTATAGAC  350

seq1  TATATTGCACATATGCATTGCTGCGTGGCTTGATTTTCTCCTTTTATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGCACATATGCATTGCTGCGTGGCTTGATTTTCTCCTTTTATAAT  400

seq1  TGCATTGTAAAAAAAAAAAACACAAAAAACAAAACATTCTCACTAGCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTAAAAAAAAAAAACACAAAAAACAAAACATTCTCACTAGCTAG  450

seq1  TGGTTACAGAAAGAGCACTTAACACCACGAGAATAGTTACAATTCATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACAGAAAGAGCACTTAACACCACGAGAATAGTTACAATTCATAGA  500

seq1  GTTGGTATTTTTATTTGGTATTCTTGGTTTTCAAGTGGAGCAAAATCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTATTTTTATTTGGTATTCTTGGTTTTCAAGTGGAGCAAAATCTGA  550

seq1  CATTAACCATGTGGACAATTTTCAAGATGAGAAAGAGGTGAGGGGCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACCATGTGGACAATTTTCAAGATGAGAAAGAGGTGAGGGGCTGAA  600

seq1  TTCTTAACTCTAAAGTGGTATATAATTATTTCATTGCATTGAGTGAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAACTCTAAAGTGGTATATAATTATTTCATTGCATTGAGTGAATTA  650

seq1  CAGGAAAATGAAACACATACTCTATCTTGTACTGTGAGAATGTTCTACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAATGAAACACATACTCTATCTTGTACTGTGAGAATGTTCTACTA  700

seq1  GCCTTAAGCTCTACTTCTTATGGTTCTGCCATGCTGGAGATATGTGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAAGCTCTACTTCTTATGGTTCTGCCATGCTGGAGATATGTGGAAA  750

seq1  TTATTTAGTAGAAAAGAAAACATCAGTACTGTGTGTTACTTTCCTTACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGTAGAAAAGAAAACATCAGTACTGTGTGTTACTTTCCTTACTA  800

seq1  CATGTTGAAATGAGTGCAGAGGCAACCTCATCGCTACCAAAATGATATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGAAATGAGTGCAGAGGCAACCTCATCGCTACCAAAATGATATCC  850

seq1  AAGAGCTACCTGGATTACTGTGGTACTTTCTGCTCACTCACATCCTTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTACCTGGATTACTGTGGTACTTTCTGCTCACTCACATCCTTAAC  900

seq1  ATTCCCTACAAACACTTTATCTTTTCTCCACACTCACTTTTCCTGGCAGA  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTAC-AACACTTTATCTTTTCTCCACACTCACTTTTCCTGGCAGA  949

seq1  TAAGCTCCATGTAC-TTTTTCTGAAAGCACAAGACTCTCTACCTTTGTGA  999
      |||||||||||||| |||||||| |||||| |||||||||||||||||||
seq2  TAAGCTCCATGTACTTTTTTCTG-AAGCAC-AGACTCTCTACCTTTGTGA  997

seq1  TTTGAATAGAAACTGTCTGCTGCAGGCTTAGAAAGAAAGC-ATAA-TCCT  1047
      |||| ||||||||||||||||||| ||||||||||||||| |||| ||||
seq2  TTTG-ATAGAAACTGTCTGCTGCAAGCTTAGAAAGAAAGCAATAATTCCT  1046

seq1  ATCATAGTTTTAAAATAAAATGTCTCCCACCT-GTTTAGAAAGCTTGT-G  1095
      ||||||| |||||   | |||||||||||||| ||||||||||  ||| |
seq2  ATCATAGGTTTAA---ATAATGTCTCCCACCTGGTTTAGAAAGGCTGTGG  1093

seq1  TGATTTTAAGGAAGTAGAGACTAGCTGGATAAAGTG-TATCACT  1138
      ||||||||| |||||  ||||||||| ||||||||| |||||||
seq2  TGATTTTAA-GAAGT--AGACTAGCT-GATAAAGTGTTATCACT  1133

seq1: chrY_6381_6539
seq2: B6Ng01-289I01.g_488_641

seq1  TTATATGCCCCAGTACAGTGGAATGCCAGAGCTAGGAAACAGAAGTGGGT  50
      |||||||||||||||||| |||||||||| || | ||||      || ||
seq2  TTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAGAAA---TTTTGAGT  47

seq1  GGGTTGGGGAGCACAGCAGGGGGGAAGGTATATGGGACTTTGGGGATAGC  100
       ||| |||||||| |||| |||  | | || | |||| ||| || ||| |
seq2  -GGTAGGGGAGCAGAGCA-GGGATAGGATACAGGGGAATTTTGGAATAAC  95

seq1  ATTTGAAATGTAAATGAAGAAAAT-ATCTAATAAAATTGTTTTTGAAAAA  149
      |||||||||||||||||||||||| |||||||||||   ||   ||||||
seq2  ATTTGAAATGTAAATGAAGAAAATAATCTAATAAAA-AATTGAAGAAAAA  144

seq1  AAAAAAAGAA  159
      ||||||||||
seq2  AAAAAAAGAA  154