BAC Information

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BAC

Clone NameB6Ng01-300K20
ChromosomeY (Build37)
Map Location 2,636,775 - 2,638,080
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
Downstream geneLOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300K20.bB6Ng01-300K20.g
ACCGA095194GA095195
length1,2201,125
definitionB6Ng01-300K20.b B6Ng01-300K20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcctgacttctccccagagtctatgaaagccagaagatcctgg
gcagatgtcatatagatcataagagaacactaatgctagcccaggctatt
gtacccagcaaaactctcaattaatatagatggagaaaccaaggtaatcc
atgagaaaaccaaatttatacaatatcttcccacaaatccagcccttgaa
agaataataaatggataaatccaacacaaggagggaaattaagctctaga
aaaagcatgaaattaatctttataaaaacctcaatgaagccacatgtaca
gaattccaactccaataacaaaagtaacaggaagcaacaatgactattcc
tcaatatctcttaatatcaatggattcaattctccaataaaaagttatag
actgacagagtggttatgtaacagggcccaaaatttcactgcatagagga
aatccatctcagtgacaaagacagacactaactccaagtaaaggactgga
aaacaattttccaagtaaatggtcacaagaaccaggctggagtagccatt
ctaatcttgaataaaatcgactttctacctcatgttataaaaagataaaa
aatgaaaaaaaaagaaaagaaaagaaaaggagagacaattcatactaatc
aaaggtaaaatttaccaagattaactctaaattctgaacatctatgctct
aaatgcaagggcagccacattcattaaagaaactatagtaaagttcaaac
cacacaatgtaccacacacggtaatagtgagagacttgaacaccccacac
tcatcaatggacagattctggaaaaagaaaataaaaagacaaagtgaaac
taactgaagttatgaaacatatgtatttaacagatatctacagaacattt
tatactaaaagaaaaggatataactttttcttagcacctcatagtacctt
ctccaaagttgaccatataattggtcacaatacaggcctcaacagataga
agagattgaaattatccatgcgtcctgtcagatcacacagaccagctgat
cttcaatagcaatataaataatagaaagtcacgttcactggaagggtgac
acattctactcatgatgacatggtcaagagatagaggataagaacctttt
tagcgtaatgaatggagcccaaaaatacctcacacttattgggagaacac
aatgggaatgtgcgacgttc
gaattcctaattgttgtaatgtataagattaggattctcattccttcatt
taggatccactacttatgttatatgttgttgtatatttcaaatctgatgt
attattttaatttagaggggttctgtttgtttatattttggcttttggga
tttgtttgtttatatttttgatttggctctccaattttattgtgttttat
ctttacatctgaaggagttgtcaaacataaaggtagagtgtggtagaatt
tactcgttctgccttattattttgaagctaggatatcaattcttttctaa
aaatatatttcatgtgtaaatattcatatgtatttttgcctacatgcatg
tttgtgcaccacatgaatgcactgcctatgaaagccacagaaaggcagaa
gatacactggaatggtagttacagagagtagtgattcccaataagggctt
ctataactaaactaatgtcttctttgaaagcaagaactattaaaaatgtg
agccatcattctattccctgtctttaaaaaaaaagatttaacttacattg
cagtcattgtacaacttcccagttctctcttccacaattcctcatcccat
tccccacaggttgcctactgcaagcagatcttctgaaaaatcaatacact
atataactaactgaaatttctgtcagtgcactacaatattctatgtgata
aataaaatatttctctcacttaatgtctactcctctaatactgagtatga
gtagtaattctcttatcttctctcctgcaaaggggatgatattgggatgt
catctacaacattcattcactctctcacacagtttatgttttctcttagc
aatcaactaataccaaagtcacacattcactcagattccaaaatagggta
tctgagctcatgtaaactgtcattctgatcagagttggaaaagaatactt
ccaatgtatattttacacacaagagcatgtccttaaaaaatcatcaaatc
attagatgatgagacatgtaataggagagtgttttctttttgatttggtt
ggtttggcttttttggtaacaccaatcatgaaaaggaaacactgtctaag
gcatatttctggaacctgaatgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2636775_2638080
seq2: B6Ng01-300K20.g_67_1191 (reverse)

seq1  TTGCATTCA-GCTCAAGATATATGCATTAGACAGTGTTT-CTTTTAATGA  48
      ||||||||| | || ||| |||||| ||||||||||||| ||||| ||||
seq2  TTGCATTCAGGTTCCAGAAATATGCCTTAGACAGTGTTTCCTTTTCATGA  50

seq1  TTGTGTGTAACAGAAAAAAAAACAAAGCAAAACCAAGCCAAAT-AAAAAG  97
      ||| |||| ||         || ||||| ||||||| |||||| ||||||
seq2  TTG-GTGTTAC--------CAAAAAAGCCAAACCAA-CCAAATCAAAAAG  90

seq1  AAACAACTTCTACTA-AACATTGTCTCATCATTTATTGTTTCGCTGATTT  146
      |||  || ||| |||  ||| ||||||||||| || || || | ||||||
seq2  AAAACAC-TCTCCTATTACA-TGTCTCATCATCTAATGATTTGATGATTT  138

seq1  TAAAAGGCCATGCTCCGGGGTGT-AACTACACATTGGAAGTATTCTTTTC  195
      |  |||| |||||||  | |||| || || ||||||||||||||||||||
seq2  TTTAAGGACATGCTCTTGTGTGTAAAATATACATTGGAAGTATTCTTTTC  188

seq1  TGACTCTGAGTCAGAATGACAGTT--------------TACCTTATTTTG  231
        ||||||| ||||||||||||||              |||| |||||||
seq2  CAACTCTGA-TCAGAATGACAGTTTACATGAGCTCAGATACCCTATTTTG  237

seq1  GAATCTGAGTGAATGTGTGACTTTGGTATTAGTTGACTGCTAAGAGAAAA  281
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAATCTGAGTGAATGTGTGACTTTGGTATTAGTTGATTGCTAAGAGAAAA  287

seq1  CACAAACTGTGT----GAGTGAATGAATGTTGTAGATGACATCCCAATAT  327
      || |||||||||    ||||||||||||||||||||||||||||||||||
seq2  CATAAACTGTGTGAGAGAGTGAATGAATGTTGTAGATGACATCCCAATAT  337

seq1  CATCCCCTTTGCAGGAGAGAAGATAAGAGAATAATTACTCATACTAGGTA  377
      |||||||||||||||||||||||||||||||| | ||||||||||  |||
seq2  CATCCCCTTTGCAGGAGAGAAGATAAGAGAATTACTACTCATACTCAGTA  387

seq1  TTAGAGGAGTAGATATTAAGAGAGAGAGAAATATTTTATTTATCACATAT  427
      ||||||||||||| ||||  || |||||||||||||||||||||||||| 
seq2  TTAGAGGAGTAGACATTA--AGTGAGAGAAATATTTTATTTATCACATAG  435

seq1  AATATTGATAGAGCACTGACAGAAATTTCAGTTAATTATATAGTGTATTG  477
      ||||||| ||| |||||||||||||||||||||| |||||||||||||||
seq2  AATATTG-TAGTGCACTGACAGAAATTTCAGTTAGTTATATAGTGTATTG  484

seq1  ATTTTGCAGAAGACCTGCTTGCAGTAGGCAACCTGTAGGGAATTGGATGA  527
      ||||| ||||||| |||||||||||||||||||||| |||||| ||||||
seq2  ATTTTTCAGAAGATCTGCTTGCAGTAGGCAACCTGTGGGGAATGGGATGA  534

seq1  GGAATTGTGGAAGATGGAACTGGGAAGTTGTACGATGACTGGAATGGAAG  577
      ||||||||||||||  ||||||||||||||||| ||||||| |||| |||
seq2  GGAATTGTGGAAGAGAGAACTGGGAAGTTGTACAATGACTGCAATGTAAG  584

seq1  TTAATTTTTTTAATCAGGCGTGTTGGTGCACGCCTTTAATCCCAGCACTT  627
      |||| | |||                                        
seq2  TTAAATCTTT----------------------------------------  594

seq1  GGAAAGCAGAGGCAGGCAGATTTCTGAGTTCGATGCCAGCCTGGTCTACA  677
                                                        
seq2  --------------------------------------------------  594

seq1  GAGTGAGTTCCTGGACAGCCGGGGCTATACAGAGAAACCCTGCCTCGAAA  727
                                                        
seq2  --------------------------------------------------  594

seq1  AAACCAAAAACAAACGAACAAACAAACAAACAAACAAAAAACAAAAACAA  777
                                                        
seq2  --------------------------------------------------  594

seq1  CAAAAATTTTTAAAAGACAGGGAATAGAATGATGGCTCACCTGTTTTATA  827
            ||||| |||||||||||||||||||||||||||| | ||| |||
seq2  ------TTTTTTAAAGACAGGGAATAGAATGATGGCTCACATTTTTAATA  638

seq1  GTTCTTGCTTTCGAAGAAGACATTAGTACAGTTATAAAAACCCTCATTGG  877
      |||||||||||| ||||||||||||||  ||||||| || |||| |||||
seq2  GTTCTTGCTTTCAAAGAAGACATTAGTTTAGTTATAGAAGCCCTTATTGG  688

seq1  TAATCACTACTCTCTGTAACTACCATTCCAGTGTATCTTCTGCCTTTTTG  927
       |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAATCACTACTCTCTGTAACTACCATTCCAGTGTATCTTCTGCCTTTCTG  738

seq1  TGGCTTCCATCTGCAGTGCATTCATGTGGTGCACAGACAAGCATATAGGC  977
      |||||| |||  ||||||||||||||||||||||| ||| |||| |||||
seq2  TGGCTTTCATAGGCAGTGCATTCATGTGGTGCACAAACATGCATGTAGGC  788

seq1  AAAA------------ATTTACACATGAAATATATTTTTAGAAAAGAATT  1015
      ||||            ||||||||||||||||||||||||||||||||||
seq2  AAAAATACATATGAATATTTACACATGAAATATATTTTTAGAAAAGAATT  838

seq1  GATATCCTAGCTTCAAAATAATAAGACCAAAAGAGTAAATTCTACCACAC  1065
      ||||||||||||||||||||||||| |  || ||||||||||||||||||
seq2  GATATCCTAGCTTCAAAATAATAAGGCAGAACGAGTAAATTCTACCACAC  888

seq1  TCCACCTTTATGTTTGTCAACTCCCTCAGATGAAAAGATAAAACAAAATA  1115
      || ||||||||||||| ||||||| ||||||| |||||||||||| ||||
seq2  TCTACCTTTATGTTTGACAACTCCTTCAGATGTAAAGATAAAACACAATA  938

seq1  AAATTGGAGAGCAAAATCAAAAATGAAAACAAACAAACAAATCCCAAAAG  1165
      |||||||||||| |||||||||||    | ||||||||||||||||||||
seq2  AAATTGGAGAGCCAAATCAAAAAT----ATAAACAAACAAATCCCAAAAG  984

seq1  CCAAAATATAAACAAAGTAAACCCCACTAAATTAAAATAATACATCAGAT  1215
      ||||||||||||||||   |||||| ||||||||||||||||||||||||
seq2  CCAAAATATAAACAAACAGAACCCCTCTAAATTAAAATAATACATCAGAT  1034

seq1  TTGAAATATACAACAACATATAACATAAGTAGTGGATCCTGAAAGAAGGA  1265
      |||||||||||||||||||||||||||||||||||||||| || ||||||
seq2  TTGAAATATACAACAACATATAACATAAGTAGTGGATCCTAAATGAAGGA  1084

seq1  ATGAGAATCCTAATCTCATACATTGCAACATCAAGGAATTC  1306
      |||||||||||||||| ||||||| |||||   ||||||||
seq2  ATGAGAATCCTAATCTTATACATTACAACAATTAGGAATTC  1125