BAC Information

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BAC

Clone NameB6Ng01-301H20
ChromosomeY (Build37)
Map Location 503,915 - 561,850
singlet/doubletdoublet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301H20.bB6Ng01-301H20.g
ACCGA095788GA095789
length1,1361,099
definitionB6Ng01-301H20.b B6Ng01-301H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(503,915 - 505,059)(560,755 - 561,850)
sequence
gaattccagttccaggaattctgctccctcctcttcccccaccccttaca
cccatcttctggattcatcaggaactaggcatgcacatggtatacagaca
taattcagactgtgttattttgaatgaaatatccattatagtctcagaca
tttaaacacttactcctcaactgatagcattgtttaagaagatcaatttg
tacagcactgttgtaggaagtaggtcactgatgatttccaagcatttagc
attaccagtgtactctgtctacttccacaacttgatattcacaatgtgag
ccatcagcaccctgctccttgccaccatgtctcactgccataatatactt
ttacccctatgaaattgtaggtcagttctccaaaatttgtgtgcatggac
ttggtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctctctc
tctctctctctctctctctcacacacacacacacacatacccatcctagt
gtaaatcattgtgctttagcacaacaaaataatacataagaaaaacacac
atatttttctaattaactctctaagatgaatatatatatatatatatata
aaaatataaaaaccttacctgtaatttctgtgctgtgaagcactgtgtat
aaactttctgctgtactgaatgatgtgaagctgtctggacactattccag
gtatcagaaacactctgaaaaaattttatttcaaaaattaggaatatttg
tttaaatccatattaactatgtctaatgaaagaacggcaattattaattg
aaatctttacaaatatatgtacttttaaatactcaaacactatctaaaca
cccatttccaaacacatttttaaaagaggcttatttcttatctgtgtttc
agagtagtgttaagactgtccattatatagtaaacatttatattttattt
ttaatgtcagcaaatagtggtgtaaaactacttttactgtgatagaaaaa
tcacaaatgaagtattatgacatagatagttcactcttctaaatataagc
caaggcagattataaagctttaccttagagatcacatgcagagtaaggga
ctacatgtatctggtcaaacatttgttgatagttct
gaattccagtgttttggtgtgcctgcagagatcagaaaaaggctttagat
ctcctggaacttcaattacaggtggttgtgagccaccagatgtgggtgct
aggatctgatctcagatccttggcatgagcaatgtatttttaatcattaa
ggcatcttcctatccccaccctgtcatggccagtgcagccattagtatca
cagaagagtaatgttagacagatataagattctgggtttaattcaagaag
gaatagtttttatttttcctttttcctttttttttttaacatgttatcta
gttcagtattgaagataacattataaatatgcttaggtaagcaaactctt
tcttcctataaattcttccttctgtacttgcaggctcttgtgaccttttt
tttctggtaggacatttcctctaggctttatttctggcttgctagttctg
tagccatgcagccacgtctgagttagagcttgtggttgaaataagaactg
tagatctgtagattatctggattcactctattagccagtgttagatattc
ttagatttggatttacagaacttagagatctactcggtttatacattcca
aaggtcttaagttacacaaaggtgaaagatgaaggatttagctttgaatc
tgcagaattgtatttccacaatcagaaagtttactcagtttattgttata
ttagatttgaagaatttccaacatggatttcttttctttctgaaaatttt
attttcacagaacttatgtttattgttgggaaatgagagtttctttttat
tatctttttgtggaaacatgaagcacagcttgattaattattatcattat
attattttagcattgtcatcttaccagagatactacagtttacagactga
ctactggaaggtcagtacatttcagtactaattttgctttgtggtgttgg
aggtgtatatttatacttagtatatatatctatattaggtatataatata
tatatataatatcaggttatatttataggtattatgtccggttttgatgg
atgattctataccaggatgttggactgggcaaaggggatgtgctcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_503915_505059
seq2: B6Ng01-301H20.b_45_1180

seq1  GAATTCCAGTTCCAGGAATTCTGCTCCCTCCTCTTCCCCCACCCCTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTCCAGGAATTCTGCTCCCTCCTCTTCCCCCACCCCTTACA  50

seq1  CCCATCTTCTGGATTCATCAGGAACTAGGCATGCACATGGTATACAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTTCTGGATTCATCAGGAACTAGGCATGCACATGGTATACAGACA  100

seq1  TAATTCAGACTGTGTTATTTTGAATGAAATATCCATTATAGTCTCAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAGACTGTGTTATTTTGAATGAAATATCCATTATAGTCTCAGACA  150

seq1  TTTAAACACTTACTCCTCAACTGATAGCATTGTTTAAGAAGATCAATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACACTTACTCCTCAACTGATAGCATTGTTTAAGAAGATCAATTTG  200

seq1  TACAGCACTGTTGTAGGAAGTAGGTCACTGATGATTTCCAAGCATTTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCACTGTTGTAGGAAGTAGGTCACTGATGATTTCCAAGCATTTAGC  250

seq1  ATTACCAGTGTACTCTGTCTACTTCCACAACTTGATATTCACAATGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCAGTGTACTCTGTCTACTTCCACAACTTGATATTCACAATGTGAG  300

seq1  CCATCAGCACCCTGCTCCTTGCCACCATGTCTCACTGCCATAATATACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGCACCCTGCTCCTTGCCACCATGTCTCACTGCCATAATATACTT  350

seq1  TTACCCCTATGAAATTGTAGGTCAGTTCTCCAAAATTTGTGTGCATGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCCTATGAAATTGTAGGTCAGTTCTCCAAAATTTGTGTGCATGGAC  400

seq1  TTGGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTCTCTC  450

seq1  TCTCTCTCTCTCTCTCTCTCACACACACACACACACATACCCATCCTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCACACACACACACACACATACCCATCCTAGT  500

seq1  GTAAATCATTGTGCTTTAGCACAACAAAATAATACATAAGAAAAACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCATTGTGCTTTAGCACAACAAAATAATACATAAGAAAAACACAC  550

seq1  ATATTTTTCTAATTAACTCTCTAAGATGAATATATATATATATATATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTCTAATTAACTCTCTAAGATGAATATATATATATATATATATA  600

seq1  AAAATATAAAAACCTTACCTGTAATTTCTGTGCTGTGAAGCACTGTGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAAAAACCTTACCTGTAATTTCTGTGCTGTGAAGCACTGTGTAT  650

seq1  AAACTTTCTGCTGTACTGAATGATGTGAAGCTGTCTGGACACTATTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCTGCTGTACTGAATGATGTGAAGCTGTCTGGACACTATTCCAG  700

seq1  GTATCAGAAACACTCTGAAAAAATTTTATTTCAAAAATTAGGAATATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGAAACACTCTGAAAAAATTTTATTTCAAAAATTAGGAATATTTG  750

seq1  TTTAAATCCATATTAACTATGTCTAATGAAAGAACGGCAATTATTAATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCCATATTAACTATGTCTAATGAAAGAACGGCAATTATTAATTG  800

seq1  AAATCTTTACAAATATATGTACTTTTAAATACTCAAACACTATCTAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTACAAATATATGTACTTTTAAATACTCAAACACTATCTAAACA  850

seq1  CCCATTTCCAAACACATTTTTAAAAGAGGCTTATTTCTTATCTGTGTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTCCAAACACATTTTTAAAAGAGGCTTATTTCTTATCTGTGTTTC  900

seq1  AGAGTAGTGTTAAGACTGTCCATTATATAGTAAACA-TTATATTT--ATT  947
      |||||||||||||||||||||||||||||||||||| ||||||||   ||
seq2  AGAGTAGTGTTAAGACTGTCCATTATATAGTAAACATTTATATTTTATTT  950

seq1  TTAATGTCAGCAAATAGTGGTGTAAAACTAC-TTTACTGTGATAGAAAAA  996
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTAATGTCAGCAAATAGTGGTGTAAAACTACTTTTACTGTGATAGAAAAA  1000

seq1  TCAACAAATGAAAGTATTAATGAACATAGATAGTTCACTCTTCTAAATAT  1046
      || ||||||| ||||||| ||| |||||||||||||||||||||||||||
seq2  TC-ACAAATG-AAGTATT-ATG-ACATAGATAGTTCACTCTTCTAAATAT  1046

seq1  AAGCCAAGGCAAAGATTATAAAAGGCTTTACCCTTAGAGATCAACATGCA  1096
      ||||||||||  ||||||||||  |||||| ||||||||||| |||||||
seq2  AAGCCAAGGC--AGATTATAAA--GCTTTA-CCTTAGAGATC-ACATGCA  1090

seq1  GAAAGTAAGGGACTACATGTATCT-GTTAAACATTTGTTGGAATAGTTCT  1145
      |  ||||||||||||||||||||| || ||||||||||||  ||||||||
seq2  G--AGTAAGGGACTACATGTATCTGGTCAAACATTTGTTG--ATAGTTCT  1136

seq1: chrY_560755_561850
seq2: B6Ng01-301H20.g_66_1164 (reverse)

seq1  AAATGAGCACAT-CCCTTTTCCCATTTCAACATTCCTTGGTATTAGAAAT  49
      |||||||||||| |||||| |||| | ||||||  | ||||| ||| |||
seq2  AAATGAGCACATCCCCTTTGCCCAGTCCAACAT--CCTGGTA-TAG-AAT  46

seq1  CATTCATTAAAA-CAGACAT-ATA-CTAT-AATAT-ACTTAATATTATAT  94
      ||| ||| |||| | ||||| ||| |||| ||||| || | |||||||||
seq2  CATCCATCAAAACCGGACATAATACCTATAAATATAACCTGATATTATAT  96

seq1  ATATAATATAATATACTTAATATAGATATATATTACTAAGTAT-AATATA  143
      |||| |||| |||||| ||||||||||||||| |||||||||| ||||||
seq2  ATAT-ATATTATATACCTAATATAGATATATA-TACTAAGTATAAATATA  144

seq1  CAC--TCAACA-CACAAAGCAAAATTAGTACTGAAATGTACTGACCTTCC  190
      |||   ||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCAACACCACAAAGCAAAATTAGTACTGAAATGTACTGACCTTCC  194

seq1  AGTAGTCAGTCTGTAAACTGTAGTATCTCTGGTAAGATGACAATGCTAAA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCAGTCTGTAAACTGTAGTATCTCTGGTAAGATGACAATGCTAAA  244

seq1  ATAATAATAATGATAATAATTAATCAAGCTGTGCTTCATGTTTCCACAAA  290
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAT-ATAATGATAATAATTAATCAAGCTGTGCTTCATGTTTCCACAAA  293

seq1  AAGATAATAAAAAGAAACTCTCATTTCCCAACAATAAACATAAGTTCTGT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATAAAAAGAAACTCTCATTTCCCAACAATAAACATAAGTTCTGT  343

seq1  GAAAATAAAATTTTCAGAAAGAAAAGAAATCCATGTTGGAAATTCTTCAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAATTTTCAGAAAGAAAAGAAATCCATGTTGGAAATTCTTCAA  393

seq1  ATCTAATATAACAATAAACTGAGTAAACTTTCTGATTGTGGAAATACAAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATATAACAATAAACTGAGTAAACTTTCTGATTGTGGAAATACAAT  443

seq1  TCTGCAGATTCAAAGCTAAATCCTTCATCTTTCACCTTTGTGTAACTTAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGATTCAAAGCTAAATCCTTCATCTTTCACCTTTGTGTAACTTAA  493

seq1  GACCTTTGGAATGTATAAACCGAGTAGATCTCTAAGTTCTGTAAATCCAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTGGAATGTATAAACCGAGTAGATCTCTAAGTTCTGTAAATCCAA  543

seq1  ATCTAAGAATATCTAACACTGGCTAATAGAGTGAATCCAGATAATCTACA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGAATATCTAACACTGGCTAATAGAGTGAATCCAGATAATCTACA  593

seq1  GATCTACAGTTCTTATTTCAACCACAAGCTCTAACTCAGACGTGGCTGCA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTACAGTTCTTATTTCAACCACAAGCTCTAACTCAGACGTGGCTGCA  643

seq1  TGGCTACAGAACTAGCAAGCCAGAAATAAAGCCTAGAGGAAATGTCCTAC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACAGAACTAGCAAGCCAGAAATAAAGCCTAGAGGAAATGTCCTAC  693

seq1  CAGAAAAAAAAGGTCACAAGAGCCTGCAAGTACAGAAGGAAGAATTTATA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAAAAGGTCACAAGAGCCTGCAAGTACAGAAGGAAGAATTTATA  743

seq1  GGAAGAAAGAGTTTGCTTACCTAAGCATATTTATAATGTTATCTTCAATA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGAGTTTGCTTACCTAAGCATATTTATAATGTTATCTTCAATA  793

seq1  CTGAACTAGATAACATGTTAAAAAAAAAAAGGAAAAAGGAAAAATAAAAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTAGATAACATGTTAAAAAAAAAAAGGAAAAAGGAAAAATAAAAA  843

seq1  CTATTCCTTCTTGAATTAAACCCAGAATCTTATATCTGTCTAACATTACT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTTCTTGAATTAAACCCAGAATCTTATATCTGTCTAACATTACT  893

seq1  CTTCTGTGATACTAATGGCTGCACTGGCCATGACAGGGTGGGGATAGGAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGATACTAATGGCTGCACTGGCCATGACAGGGTGGGGATAGGAA  943

seq1  GATGCCTTAATGATTAAAAATACATTGCTCATGCCAAGGATCTGAGATCA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTTAATGATTAAAAATACATTGCTCATGCCAAGGATCTGAGATCA  993

seq1  GATCCTAGCACCCACATCTGGTGGCTCACAACCACCTGTAATTGAAGTTC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTAGCACCCACATCTGGTGGCTCACAACCACCTGTAATTGAAGTTC  1043

seq1  CAGGAGATCTAAAGCCTTTTTCTGATCTCTGCAGGCACACCAAAACACTG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGATCTAAAGCCTTTTTCTGATCTCTGCAGGCACACCAAAACACTG  1093

seq1  GAATTC  1096
      ||||||
seq2  GAATTC  1099