BAC Information

Click to search

BAC

Clone NameB6Ng01-334L21
ChromosomeY (Build37)
Map Location 87,783 - 88,967
singlet/doubletsinglet
Overlap geneZfy1
Upstream geneLOC100039202
Downstream geneUbe1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334L21.bB6Ng01-334L21.g
ACCGA120172GA120173
length1,2161,178
definitionB6Ng01-334L21.b B6Ng01-334L21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttaattagcaccacagcagccttataataggatgttaaaactct
aaggtgaagaagaatgattttacattaatgttttttcttgccaaagaata
gttgtggacatatttaataacaataactagaatatgtagctaatatttga
ttactaccaattataatcgataccaatagattatagaagtttcctctact
ttctgttaaagcctttttggttctcaccagttaatttgaatctcacttga
tagcacctaacaaaggcttaggttctcctgtgctgagtttaaggtgaggt
ctttagcaattaacatctcctggaagcttttgaaaataaaaattgaagca
aatttgtaccacaattttccagtataattaaaaccctaaatattaaaaat
attgcctctgaatcttatggagcaactattccctagaactttaaactttc
ctttagaggcattagctaaaatatttttcacccaggaaacaatatacact
gaaagatttaaagtcttagcttcttgtattgaagcctggacaatgaaaat
ttcttacataatgtaagactatattagccatacctaggggcaaaaccctt
taatggtcaccagttcactagaagtaaactctttacaattaacaggataa
aaaaggaagaaataatctttcaaatctataataattttatatgaagtagg
caagctatcttgtaatgcctttataagttctacagcctgattgacctttt
aaaaatcttgaatttagactttattatgaacaccacctgggtagatctgg
aaaaaaaaaaaagttgtttagctgaaaaagaaatccccctgaaggcaggg
agggggtgaagtttcaagaacttccctaggtgcagtctgcaaaacacaag
aaacgttgcacaagcttccctgaggctgctctaagcttagtatcaaccca
aatatatatattttctaatctgagcattttgggccttcctgtaataggac
cgattttagaggacaatttaactgtctatgcctctaattttgataccttt
tcttaaggatgattactctatattatctaattacaattatacaggtgaat
aagatcttaattgaaaatcaacctgcaagctgcagtccattggaacactg
gcaatttaaccaaatgtaagttccggtgtggcaaatttgagaaatatatc
cttatataacaccttt
gaattcaggaaattcattctctaaacattctttttatttctcttttacta
ttactcaatctctactattgcacatgtgtctcataaaagttttgcttttg
tttatatatggcttaattaagttttaagatttctgtgtatgattcttcat
atactcctaccttctgctatcttgtactatacatttcacagttcacttcc
acttgtttctcttttattactccttttaattatattctttaattacaacc
tttagtagtattaatagtctctaaaatgagtgtaccttaacagcatctca
actttccgcttgaagctacttaatacccacctcgatttttttaaagttga
ttaatgtttattcctgtcctacattatttcccatccctaattcattaact
aaaattgaagtgctccaagctgtcttttattattttttctccaagagtta
ttaaaatcaaagggataactatagataattgtctaccataacattgcaaa
atggtaagtaacatctagcagccactggtgttttgtgattaatattctaa
ttctggataatacagcacacatttgagctcttggtctgagggaaagtttt
ctgaaacttcaacgtacttcaacgtacgtacttcaactctgcaatcaata
tctattccccatatccacaatgcaattacttcaactgaaaaaaagtcata
aaaacaaatttaaaaaccaaagcaatctaactcttctaaaattaccaatt
ctacagttatagattatttttagttatttaaaatctcaagatagtcaatt
caaaacattagcatgtgcaacaaagaagctcctcattgagaatacaaata
gctgagtgaaatacagaagatgatggtaagatatgacagagtaactcaat
aaagaggaataataaaaatcaaccagaaatacttaggaataaatttagtg
gtcaaattaaaagctgggtaaacccttccgctcgactcgagactcgagcc
ccaggctactttgccagcagagtcttgcccaacacccgcaagggccacac
gggactcccccacgggaccctaagactctggtgagttgaaacacagcgcc
tgcccattcatcgcgcggtacttgagaactgcgtactagaagcagcttac
cggacttgatctgggtcacaagtccctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_87783_88967
seq2: B6Ng01-334L21.g_67_1244

seq1  GAATTCAGGAAATTCATTCTCTAAACATTCTTTTTATTTCTCTTTTACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAAATTCATTCTCTAAACATTCTTTTTATTTCTCTTTTACTA  50

seq1  TTACTCAATCTCTACTATTGCACATGTGTCTCATAAAAGTTTTGCTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAATCTCTACTATTGCACATGTGTCTCATAAAAGTTTTGCTTTTG  100

seq1  TTTATATATGGCTTAATTAAGTTTTAAGATTTCTGTGTATGATTCTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATGGCTTAATTAAGTTTTAAGATTTCTGTGTATGATTCTTCAT  150

seq1  ATACTCCTACCTTCTGCTATCTTGTACTATACATTTCACAGTTCACTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCTACCTTCTGCTATCTTGTACTATACATTTCACAGTTCACTTCC  200

seq1  ACTTGTTTCTCTTTTATTACTCCTTTTAATTATATTCTTTAATTACAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTCTCTTTTATTACTCCTTTTAATTATATTCTTTAATTACAACC  250

seq1  TTTAGTAGTATTAATAGTCTCTAAAATGAGTGTACCTTAACAGCATCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAGTATTAATAGTCTCTAAAATGAGTGTACCTTAACAGCATCTCA  300

seq1  ACTTTCCGCTTGAAGCTACTTAATACCCACCTCGATTTTTTTAAAGTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCGCTTGAAGCTACTTAATACCCACCTCGATTTTTTTAAAGTTGA  350

seq1  TTAATGTTTATTCCTGTCCTACATTATTTCCCATCCCTAATTCATTAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTTATTCCTGTCCTACATTATTTCCCATCCCTAATTCATTAACT  400

seq1  AAAATTGAAGTGCTCCAAGCTGTCTTTTATTATTTTTTCTCCAAGAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGAAGTGCTCCAAGCTGTCTTTTATTATTTTTTCTCCAAGAGTTA  450

seq1  TTAAAATCAAAGGGATAACTATAGATAATTGTCTACCATAACATTGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCAAAGGGATAACTATAGATAATTGTCTACCATAACATTGCAAA  500

seq1  ATGGTAAGTAACATCTAGCAGCCACTGGTGTTTTGTGATTAATATTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAGTAACATCTAGCAGCCACTGGTGTTTTGTGATTAATATTCTAA  550

seq1  TTCTGGATAATACAGCACACATTTGAGCTCTTGGTCTGAGGGAAAGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATAATACAGCACACATTTGAGCTCTTGGTCTGAGGGAAAGTTTT  600

seq1  CTGAAACTTCAACGTACTTCAACGTACGTACTTCAACTCTGCAATCAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTTCAACGTACTTCAACGTACGTACTTCAACTCTGCAATCAATA  650

seq1  TCTATTCCCCATATCCACAATGCAATTACTTCAACTGAAAAAAAGTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCCCCATATCCACAATGCAATTACTTCAACTGAAAAAAAGTCATA  700

seq1  AAAACAAATTTAAAAACCAAAGCAATCTAACTCTTCTAAAATTACCAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATTTAAAAACCAAAGCAATCTAACTCTTCTAAAATTACCAATT  750

seq1  CTACAGTTATAGATTATTTTTAGTTATTTAAAATCTCAAGATAGTCAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTTATAGATTATTTTTAGTTATTTAAAATCTCAAGATAGTCAATT  800

seq1  CAAAACATTAGCATGTGCAACAAAGAAGCTCCTCATTGAGAATACAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATTAGCATGTGCAACAAAGAAGCTCCTCATTGAGAATACAAATA  850

seq1  GCTGAGTGAAATACAGAAGATGATGGTAAGATATGACAGAGTAACTCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTGAAATACAGAAGATGATGGTAAGATATGACAGAGTAACTCAAT  900

seq1  AAAGAGGAATAATAAAAATCAACCAGAAATACTTAGGAATAAATTTAGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGAATAATAAAAATCAACCAGAAATACTTAGGAATAAATTTAGTG  950

seq1  GTCAAATTAAAAGCTGGGTAAACCCTTCCGCTCGACTCGAGACTCGAGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATTAAAAGCTGGGTAAACCCTTCCGCTCGACTCGAGACTCGAGCC  1000

seq1  CCAGGCTACCTTGCCAGCAGAGTCTTGCCCAACACCCGCAAGGGCCCACA  1050
      ||||||||| |||||||||||||||||||||||||||||||||| |||||
seq2  CCAGGCTACTTTGCCAGCAGAGTCTTGCCCAACACCCGCAAGGG-CCACA  1049

seq1  CGGGACT-CCCCACGGGACCCTAAGACCTCTGGTGAG-TGGAACACAGCG  1098
      ||||||| |||||||||||||||||| |||||||||| || |||||||||
seq2  CGGGACTCCCCCACGGGACCCTAAGA-CTCTGGTGAGTTGAAACACAGCG  1098

seq1  CCTGCCCCAATCCAATCGCGCGGAACTTGAG-ACTGCGGTACATAGGGAA  1147
      |||||||  || | ||||||||| ||||||| ||||| |||| ||  |||
seq2  CCTGCCC--ATTC-ATCGCGCGGTACTTGAGAACTGC-GTAC-TA--GAA  1141

seq1  GCAGGCTACCCGGGCCTGATCTGGGGCACAAGTCCCTT  1185
      ||| |||  |||| | ||||||||| ||||||||||||
seq2  GCA-GCTTACCGGACTTGATCTGGGTCACAAGTCCCTT  1178