BAC Information

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BAC

Clone NameB6Ng01-339N20
ChromosomeY (Build37)
Map Location 849,086 - 850,146
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y
Downstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339N20.bB6Ng01-339N20.g
ACCGA123744GA123745
length1,1641,056
definitionB6Ng01-339N20.b B6Ng01-339N20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaatcaac
atcataagggaaatgcaaatcaaaacaaccctgagattccacctcacacc
agtcagaatggctaagatcaaaaattcaggtgacagcagatgctggtgag
gatgtggagaaagaggaacactccgccattgttggtggtattgcaagctt
gtacaaccactctggaaatcagtttggcggttcctcagagaactggacat
agtactaccggaggatcctgcaacacctctcctgggaatatatccagaag
atgtcccaaccagtaagaaggccacaagctccactatgttcatggcagcc
ttatttataataaccaaaagctggaaacaacccagatgtccctcaacaga
ggaatggatacagaaaatgtggtacatttacacaatggagtactactcag
ctattaaaaagaatgaatttatgaaattcctaggcaaatggatggacctg
gagggcatcatcctgagtgaggtaacccaatcacaaaggaacttacacaa
tatttactcattgataagtggatattagcccagaaacttaggataaccaa
gatataagatacaatttgctaaacgcatgaaacttaagaagaatgaagac
caaattgtggacaatttgcccctccttagaattgagaacataacaaccat
gtaaggagttacagagacaaagtttggagctgtgacaaaaggatggacca
tttagagactgccatatccggggatccaacccataattagcttccaaatt
ctgactccattgcacacactagcaaaattttgctgaaaggacccagatag
tgctctcttttgtgagactatgccggggcctagcaaacacagaagtggat
gctcacagtcagctattggatggatcacagggttccccagtggagagcta
gagaagtacctcaaggagctaaggggatctgcaaccctataggtgaaaca
atattatgaactaccagtaccccccagagctctgtctctagctgcatatg
tatcaagatgtctagtaggccatcactgaagagaggctcattgacttgca
ccttattggctagtacatgacgtcagcctaagtgtaatggggctgctagg
ggctgctctctcac
gaattctttgtgcagtttataaagcagggatcttgtccctggaattatgt
gcaatatctaattctgcagtaataggcaccaaggatatagtgtcacttgt
caaaactaggtaaatggaatcatggttgttttgtggcccaacaccatagg
ctcttgagaccataatgggcttgactgtgcctctaggactacttagtgag
cttgtgtagccaggtcaccctctacctagacacccagcttctgtttgcct
tggaccagggtaagaagtttcagaactaccataatgttcaaggacatagg
atccaaatttgtcattctttggtcacagcctgttcaagtgaaccttcagg
tttgtgttcacaggtttctatcctcctggggttaggctttacctgtggtt
aaatcctttgtgtgagaagcaaaaaacagagcataagtcagtcatgtggg
acattcagagctacagagcttggtcaatgagaagtcttagtcctcagaga
acctcaatcagcttaagactagcttatattggtattttcctgtcagggag
ccaacctttttggaatgtccatttcggcctttcactctttctgaacgggt
gctatcccttctgcctattagtcattagtttgcattgagcctataaggct
ccaattttcaagtgtgaaagagactgttaccctccctcacccccagtatt
gccctgtcatcctgaaatgcctctggatagaaaaatgattcacattggga
gaagcctgtcaagcagagttttacagagctaattgttaaggaataggtag
gtaggtagactgtactccccttggggctcctgttctatcttgagattatt
atccccctactttttgatatttctccaataccttggacaaagaagattgt
tgttcttttggaaggaacaacaatccctattggtgctgagaatttcagaa
aactgctttttttctctatgatgctattctctctttatgattttgaatgc
aatgtctaacttatattgggacatttcaaagtctcatgggctttctggac
ttagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_849086_850146
seq2: B6Ng01-339N20.g_66_1121 (reverse)

seq1  CACTAAGTCCCAGAAA-CCCATGAAGACTTTTGAAATGTCCCAATATAGT  49
      |||||||| ||||||| |||||| |||| |||||||||||||||||||  
seq2  CACTAAGT-CCAGAAAGCCCATG-AGAC-TTTGAAATGTCCCAATATAAG  47

seq1  TAAGACATTTGCATTCCAAAAATCATAAAGAGAGAATAGCCAATTCATAG  99
      | ||||| ||||||||  ||||||||||||||||||||||    ||||||
seq2  TTAGACA-TTGCATTC--AAAATCATAAAGAGAGAATAGC---ATCATAG  91

seq1  AG-AAAAAAGCAG-TTTCTGAAATTCTCAGCACCAATAGGGATTGTTGTT  147
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAGCAGTTTTCTGAAATTCTCAGCACCAATAGGGATTGTTGTT  141

seq1  CC-TCCAAAAGAACAACAATCTTCTTTGTCCAAGGTATTGGAGAAATATC  196
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAAAAGAACAACAATCTTCTTTGTCCAAGGTATTGGAGAAATATC  191

seq1  AAAAAGTAGGGGGATAATAATCTCAAGATAGAACAGGAGCCCCAAGGGGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAGGGGGATAATAATCTCAAGATAGAACAGGAGCCCCAAGGGGA  241

seq1  GTACAGTCTACCTACCTACCTATTCCTTAACAATTAGCTCTGTAAAACTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTCTACCTACCTACCTATTCCTTAACAATTAGCTCTGTAAAACTC  291

seq1  TGCTTGACAGGCTTCTCCCAATGTGAATCATTTTTCTATCCAGAGGCATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGACAGGCTTCTCCCAATGTGAATCATTTTTCTATCCAGAGGCATT  341

seq1  TCAGGATGACAGGGCAATACTGGGGGTGAGGGAGGGTAACAGTCTCTTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGACAGGGCAATACTGGGGGTGAGGGAGGGTAACAGTCTCTTTC  391

seq1  ACACTTGAAAATTGGAGCCTTATAGGCTCAATGCAAACTAATGACTAATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGAAAATTGGAGCCTTATAGGCTCAATGCAAACTAATGACTAATA  441

seq1  GGCAGAAGGGATAGCACCCGTTCAGAAAGAGTGAAAGGCCGAAATGGACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGGGATAGCACCCGTTCAGAAAGAGTGAAAGGCCGAAATGGACA  491

seq1  TTCCAAAAAGGTTGGCTCCCTGACAGGAAAATACCAATATAAGCTAGTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAAAGGTTGGCTCCCTGACAGGAAAATACCAATATAAGCTAGTCT  541

seq1  TAAGCTGATTGAGGTTCTCTGAGGACTAAGACTTCTCATTGACCAAGCTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGATTGAGGTTCTCTGAGGACTAAGACTTCTCATTGACCAAGCTC  591

seq1  TGTAGCTCTGAATGTCCCACATGACTGACTTATGCTCTGTTTTTTGCTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTCTGAATGTCCCACATGACTGACTTATGCTCTGTTTTTTGCTTC  641

seq1  TCACACAAAGGATTTAACCACAGGTAAAGCCTAACCCCAGGAGGATAGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAAAGGATTTAACCACAGGTAAAGCCTAACCCCAGGAGGATAGAA  691

seq1  ACCTGTGAACACAAACCTGAAGGTTCACTTGAACAGGCTGTGACCAAAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGAACACAAACCTGAAGGTTCACTTGAACAGGCTGTGACCAAAGA  741

seq1  ATGACAAATTTGGATCCTATGTCCTTGAACATTATGGTAGTTCTGAAACT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAATTTGGATCCTATGTCCTTGAACATTATGGTAGTTCTGAAACT  791

seq1  TCTTACCCTGGTCCAAGGCAAACAGAAGCTGGGTGTCTAGGTAGAGGGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCCTGGTCCAAGGCAAACAGAAGCTGGGTGTCTAGGTAGAGGGTG  841

seq1  ACCTGGCTACACAAGCTCACTAAGTAGTCCTAGAGGCACAGTCAAGCCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTACACAAGCTCACTAAGTAGTCCTAGAGGCACAGTCAAGCCCA  891

seq1  TTATGGTCTCAAGAGCCTATGGTGTTGGGCCACAAAACAACCATGATTCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTCTCAAGAGCCTATGGTGTTGGGCCACAAAACAACCATGATTCC  941

seq1  ATTTACCTAGTTTTGACAAGTGACACTATATCCTTGGTGCCTATTACTGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCTAGTTTTGACAAGTGACACTATATCCTTGGTGCCTATTACTGC  991

seq1  AGAATTAGATATTGCACATAATTCCAGGGACAAGATCCCTGCTTTATAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAGATATTGCACATAATTCCAGGGACAAGATCCCTGCTTTATAAA  1041

seq1  CTGCACAAAGAATTC  1061
      |||||||||||||||
seq2  CTGCACAAAGAATTC  1056