BAC Information

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BAC

Clone NameMSMg01-067N16
ChromosomeY (Build37)
Map Location 2,785,567 - 2,785,883
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067N16.T7 (MSMg01no067_n16.b1)MSMg01-067N16.TJ (MSMg01no067_n16.g1)
ACCAG292489AG292490
length682673
length of high quality
(start - end)
316 (36 - 351)278 (78 - 355)
definitionCHROMAT_FILE: MSMg01no067_n16.b1 PHD_FILE: MSMg01no067_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:05 2005CHROMAT_FILE: MSMg01no067_n16.g1 PHD_FILE: MSMg01no067_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:05 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCTT
TGCTTTTCTCTTGTTTCTCCATTATTTCAGCAAGATTCTGCATTTCCTTT
TGTTTTGGAAGACTCTCGAGGAATCCTAAATCCAGACTTTAGAGCAGTTA
TTTAAAATTCTTGCTGGTGGTTCTGACAATGGTTTCCTCTTTTTTTTTAA
TTAGGTATTTTTTCATTTACATTTCCAATACTATCCCAAAAGTCCCCATA
CCGACCTCAACCACACCCCCATCACCACCACCATATCTTGACCCTGGCAT
ACCCCTGATTTAAGACATATAAAGTTTGCAAAACTGATGGGCCTCTCTTT
CTTTTGATGTTCAACTACTCCGCCTTCTGATACAAATGCAGCCAGAAATA
TGATCACTGACAAATTGCTAGAAAAATGAGCTCTGCGGGGATTCTTTAGT
TCATATTGTTGTTCCACTTATGGGATTGCAGACCCCTTTAGCTCCTTGGG
AAACTTCTCTATCTCCTCCATTTCGGACCCTGTGATTTATCCAATAGCTG
AATGTGAGCATCCATTTCTGTGTTTGCTAGGTCATGGTATATCCTTCCCC
AAATATTGTTTAATCTGGGTCCTTTCCATTATTACTCTTGCCAGCGTAAC
GCCACCGTTGTCACTGCTTTGTATTCTGTAAA
CATCGATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGACAACTATATAAATCTGTC
CCTGTGACAGTTAGGACCTCTATTCTATATCATGAAAGAAAATCTGTGCA
GAGGGGTTTTACTTCACCAAAGTGGACAAATATAAATTTTATTAACTATC
TTTTCAGAGCTATTTATTATCAGCTATCTTTGTCTGGGCATCTCTAAGGG
CTAAAGTTTGAAATCTTGCTTTATCTATATATTATTCAATAATTATGTTA
GGGATATTATATACTTATTATAACTGACATACATTGTTCTGATAGATTAG
AATAACGCCTGTTTATCTATCTCACCCCATTTCAAAAGCCCAAGTACACA
TATTTCAGGGTTTCATACCCAGGAACTACACAAATTAAATACGGAGCTGA
GAAATATTATTTCTGATAATTAAATCAAAGGAAAACATATTCTCCCAAAA
ATATACTTACATATTTTTACTATATTTGTTTGTAATCGTTGTTAGCTAAA
AGCAGGTGTTTTATCTGGGAAATGACCAAATCTCTGGTGTGTCTAGTGCA
TAGATTATTTCTCCGCATTTAAATAATTAATGAGTACTCCCCATCTTATG
TTCCCCTTCCCCATTTATTGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_n16.b1 MSMg01no067_n16.b1 CHROMAT_FILE:
MSMg01no067_n16.b1 PHD_FILE: MSMg01no067_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:05 2005
         (316 letters)



>mm_chrY_2785529_2786245
          Length = 717

 Score =  449 bits (232), Expect = e-130
 Identities = 296/320 (92%), Gaps = 11/320 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcctttgcttttctcttgtttctccattatttcag---caagattctgcatttc 61
           |||||||  ||| |||||||||||||||||||  ||| |||   ||||||||||||||||
Sbjct: 355 gaattcttgtttccttttctcttgtttctcca--attacagcaccaagattctgcatttc 298

                                                                       
Query: 62  cttttgttttggaagactctcgaggaatcctaaatccagactttagagcagttatttaaa 121
           |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 297 cttttgttttggaagattctcgaggaatcctaaatccagactttagggcagttatttaaa 238

                                                                       
Query: 122 attcttgctggtggttctgacaatggtttcctc-tttttttttaa-ttaggtattttttc 179
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 237 attcttgctggtggttctgacaatggtttcctcatttttttttaaattaggtattttttc 178

                                                                       
Query: 180 atttacatttccaatactatcccaaaagtcc--ccataccgacctcaaccacacccccat 237
           |||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||| 
Sbjct: 177 atttacatttccaatactatcccaaaagtcctcccatacccacctcaaccacaccccca- 119

                                                                       
Query: 238 ca-ccaccaccatatcttgaccctggcatacccctgatttaagacatataaagtttgcaa 296
           || ||||||||| |||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 118 caaccaccaccacatcttgtccctggcatacccctgaattaaggcatataaagtttgcaa 59

                               
Query: 297 aactgatgggcctctctttc 316
            ||||||||| |||||||||
Sbjct: 58  gactgatggggctctctttc 39


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 717
Length adjustment: 9
Effective length of query: 307
Effective length of database: 708
Effective search space:   217356
Effective search space used:   217356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)