BAC Information

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BAC

Clone NameMSMg01-072P09
ChromosomeY (Build37)
Map Location 1,316,265 - 1,316,913
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072P09.T7 (MSMg01no072_p09.b1)MSMg01-072P09.TJ (MSMg01no072_p09.g1)
ACCAG296375AG296376
length706705
length of high quality
(start - end)
654 (45 - 698)632 (74 - 705)
definitionCHROMAT_FILE: MSMg01no072_p09.b1 PHD_FILE: MSMg01no072_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:53 2005CHROMAT_FILE: MSMg01no072_p09.g1 PHD_FILE: MSMg01no072_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:53 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAATCCGCGG
AATTCATTTGTCTCTCCGTGTCCTCTACTCTTTGTGTGTCCCTTATTACT
TTTAATGGTCACCATCAATTAGAACTTTCTTATCTTCAATCTGGTCTGTT
TTATGAATGTGAATTTTGGATTTCTTAAAAAAGATATCTTTGTGGGATTA
GAGAGATGAATCAATGGTAGCAAGCACTTTTGCACCACAAGAAAAATGGA
TTTGGTTTCTTGATTTCATATCCAATGGCAAATAATCACCTTTAATGGCA
GCTCCAGAGTACCTGACAACGTATGTCTCTATGTTCACCTGTACTCAAAA
GCACATGCCATATCCCCACCCACATAAGTAAAGATAATAAATCTTAAAAT
GTGAGACAGGTTTCTTTAAGTGCCATTATTCAAAGAAAACCTGATTTTCT
CTGATTTCTGAGTCTATTTCAATCAGTTTTCTGGGTTTCACCTTGTGCAA
CAAGGCCACATTTCTTTTAAATGTCCCACTTTCCCAAAATTTTTGTTTCT
CCTTCAGTCTTCACATCAGAGGTTCTACCTATGTCCTGTCCTTCTCCCCT
ACTTCCTAAACATCCATCTTTTTCTGCCATCCCTGCTCCTCCAAGTTCCA
TCTCCATTTCCTTATTCTTCATGCAGACCAGAGAAGCTGTTCATTTTAGC
ATGTAT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAGACCATAGTTTGCTCAAGGAATGC
CTAGGACAGGAATTCCTAGGTGAGGTATCTAACTTAGCAATATGTCAAAA
TCAATCCTTAGAGGCACTTACAAAAACCAATATTAAGGGAAAGCACACAG
ATCCATTTACCGACTAAAACAAGGACATTGGAACATTCATTATACAGGTT
ACCATGAATACAGGAGACTAAGTTTCCGTGAAGTTTTCGCCTCGGGACCA
TGTCTAGGCTTTTCGGCCTGTCAGGTGGGTCACTACTGGTGTGTTTGTAG
CAGTAGCTGAAATCAAGGCATTTGGAGGAAAATGGATGGAAGGAGAGTGT
TTTGTTAGGTGAGTTAACACAGATTTGGAATAAGGTAATTAACATAGTTT
TGCTCTCATACGGGTTTGAGGCCATTTTTATATAATTTCGTGCATGTGTG
AGGTTGAGTGATAGTATTCTCTTGCAGAAAGATAGAAAACCTAATATATT
ACTTATCATAATGAACATAAAGGGGAGTTAGCAATTGCTGTATTATTGCT
GTGATCAACCACTATTACCAAGGCAACTAGTAGAAGGAAAGCTTTTTTTG
TCTTATCATTCCAGAGGGATAAGACTTTATCATGATGCCACAACTCTTCC
CTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_p09.b1 MSMg01no072_p09.b1 CHROMAT_FILE:
MSMg01no072_p09.b1 PHD_FILE: MSMg01no072_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:53 2005
         (654 letters)



>mm_chrY_1316061_1317106
          Length = 1046

 Score =  468 bits (242), Expect = e-136
 Identities = 560/684 (81%), Gaps = 69/684 (10%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcatttgtctctcc-gtgtcctctactc-tttgtgtgtcccttattactttt--a 60
           |||||||||||||| | || ||||||||||||| ||||||||||| ||||| |||||  |
Sbjct: 205 ggaattcatttgtccc-ccagtgtcctctactcctttgtgtgtcctttatt-ctttttca 262

                                                                       
Query: 61  atggtcaccatcaattagaactttcttatcttcaatc-tggtctg--ttttatgaatgtg 117
           | | |||||| ||||| || |||||||| ||||| || ||||||   ||||  |  ||||
Sbjct: 263 a-gatcaccagcaatttgatctttcttaccttca-tcctggtctccctttt--ggctgtg 318

                                                                       
Query: 118 aattttggatttcttaaaaaagatatctttgtgggattagagagatga-atcaatggtag 176
           ||| |||||||||||||||| | ||| ||| ||||| ||||||||||| | || ||||  
Sbjct: 319 aatattggatttcttaaaaagg-tatatttatgggactagagagatgaca-cagtggt-- 374

                                                                       
Query: 177 caag--cacttttgcac-cacaagaaaaatggatttggtttcttgatttcatatccaatg 233
           ||||  ||||||||||| | |||||| | ||||||||||| ||||| ||| |||||||||
Sbjct: 375 caagagcacttttgcactc-caagaagactggatttggttccttgaattcgtatccaatg 433

                                                                       
Query: 234 gcaaataatcacctttaatggcagctccagagtacctgacaacgt-atgtctctatgttc 292
           ||  | ||||| |||||||| ||||||||| | |||||||||| | || ||||| || ||
Sbjct: 434 gctcacaatcatctttaatgccagctccaggggacctgacaac-tcatttctctgtggtc 492

                                                                       
Query: 293 acctgtactcaaaagcacatgccatatccccacccac--ataa--gtaaagataataaat 348
           ||||||||||| ||||||||||| ||    |||||||  ||||  ||||| |||||||||
Sbjct: 493 acctgtactcacaagcacatgcccta----cacccactcataaaagtaaaaataataaat 548

                                                                       
Query: 349 cttaaaatgtgagacaggtttctttaagtgc--cattattcaaa-gaaaacctgattttc 405
           ||||||| | |||||| ||||| ||| | ||  ||||||| ||| |||| ||||||||||
Sbjct: 549 cttaaaaagagagacaagtttcatta-g-gcttcattatttaaatgaaa-cctgattttc 605

                                                                       
Query: 406 tctgatttctgagtctatttcaatcagttttctgggtttcaccttgtg--caacaaggcc 463
           |||||||||||||||| |||  ||||||||| ||||||| ||||||||  |  ||||| |
Sbjct: 606 tctgatttctgagtctgtttggatcagttttttgggtttaaccttgtgttc--caaggtc 663

                                                                       
Query: 464 acatttcttttaaatgtc--ccact--ttcccaaaatttttgtttctccttcagtcttca 519
           ||||| ||||||    ||  |||||  ||||| ||  ||||||||||||| ||| |||||
Sbjct: 664 acattcctttta----tctgccactcgttccccaa--ttttgtttctcct-cagacttca 716

                                                                       
Query: 520 catcagaggttctacctatgtcctgtccttctcccctacttcctaaacatccatcttttt 579
           || ||||| ||||||||||||  | |  || |||||||||||||||||||||||||||| 
Sbjct: 717 caccagagattctacctatgt--ttt--tt-tcccctacttcctaaacatccatcttttg 771

                                                                       
Query: 580 ctgccatccctgctcctccaagttcc-atctcca-tttccttattcttcatgcagaccag 637
           ||||||||||||||||||||| |||| ||||||| |||| ||  |||||||||||| |||
Sbjct: 772 ctgccatccctgctcctccaa-ttcccatctccaatttc-ttgctcttcatgcagaacag 829

                                   
Query: 638 agaag-------ctgttcatttta 654
           |||||       ||||||||||||
Sbjct: 830 agaagataagtcctgttcatttta 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1046
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1036
Effective search space:   667184
Effective search space used:   667184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)