BAC Information

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BAC

Clone NameMSMg01-074M07
ChromosomeY (Build37)
Map Location 2,785,621 - 2,785,883
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074M07.T7 (MSMg01no074_m07.b1)MSMg01-074M07.TJ (MSMg01no074_m07.g1)
ACCAG297745AG297746
length702717
length of high quality
(start - end)
266 (43 - 308)131 (73 - 203)
definitionCHROMAT_FILE: MSMg01no074_m07.b1 PHD_FILE: MSMg01no074_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:14 2005CHROMAT_FILE: MSMg01no074_m07.g1 PHD_FILE: MSMg01no074_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:14 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTGTTTCCTTTTCTCTTGTTTCTCCATTACAGCACCAAGATTCTGCAT
TTCCTTTTGTTTTGGACCATTCTCGAGGAATCCTAAATCCAGACTTTAGG
GCAGTTATTTAAAATTCTTGCTGGTGGTTCTGACAATGGCTTCCTCATTT
TTTTTTAAATTAGGTATTTTTTCATTTACATTTCCAATACTATCCCACAA
GTCCTCCCATACCCACCTCAACCACACCCCCACAACCTCCACCACATCTT
GTCCCTGGCATACTCCTGATTTAAGGTATATAAAGTTTGCAAGACTGATG
GCGCTCTCTTTCCAACGATAACCAACTAGCCCATCTTCTGATACAACTGC
TGCTAGAAACCTGAGCTCTGATATGCTGCTAGAATAATGAGCTCTGGCGG
GTTTCTTTACTTCATATTGTTGTTCCCCTTATGGGATTGCAGACTTCTTT
AGCTCCTTGGTTACCTTCTCTACCTCCTCCACCTCTGTCCCTGCGACTCT
TCCAATACCCGTCTGTGTTCACCCACTTCCGCGTTTTGTTTGCCCTCGTC
ATATCCTCCCAACATACTGTTACATCTGGTTTCTTCCCGTAATACCCTGT
CCTTGTTTTGCCTTGGTGTTTTCGTCCGTCACCTGATCATTCCACGTTTC
CC
CAATATAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTACGTGTCTCAACCCTTCGCTGATGAAG
GGCTTCTCCACCTGTATTCCGTCTGCATTTTCCTACTTTAAGGAGTGGGT
GGTGGTAGGCTTTTTGCCGTGATCCTATGTGGTGCAGTGTTGCTTTTGCT
CTGGATGGTCTGTAAACTTAAAGCCCAAACAAAAAGGGACAACATGGTGA
TAGCCCAAGCACTTGTACCATTACAACATGTTACCTCCCTTGATATGCGG
TTATCTACACTCAATTTTTATTTTCACTGGCTGCTCAGCTTTTGCTACCC
CATGATGTTTTTTTCCCCCCCCCCCCCCCCACTAAGTGTGTTTATGCAAC
CTACAGACTTTTACCCCCAACCACAGTAATAAATTTCCCCTGTGCCACAC
CCTTCACCCTATCCTAACAACACTCGCCATCCTGTACTAATACCGCATGA
ATACACTGTTTCTTCTCTCGTTATACTGATTCTTTTATCCCCCACTTATC
CCTCCCCCCCCTTTTCTCCTCCCTCCTACTCCCTCCCTTATTAAATCTCC
CCTCCCCCCCCCTTAATCCCCCCCCTTTTCCTTCAACCCATCTCATCCTT
TTTTCCACTTCAATTTTTACATTCACCCCCTTACCTCATACCCCCCTTCC
ACTCTCTATCCTTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_m07.b1 MSMg01no074_m07.b1 CHROMAT_FILE:
MSMg01no074_m07.b1 PHD_FILE: MSMg01no074_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:14 2005
         (266 letters)



>mm_chrY_2785536_2786202
          Length = 667

 Score =  462 bits (239), Expect = e-135
 Identities = 257/263 (97%), Gaps = 1/263 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgtttccttttctcttgtttctcc-attacagcaccaagattctgcatttcct 63
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 348 gaattcttgtttccttttctcttgtttctccaattacagcaccaagattctgcatttcct 289

                                                                       
Query: 64  tttgttttggaccattctcgaggaatcctaaatccagactttagggcagttatttaaaat 123
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tttgttttggaagattctcgaggaatcctaaatccagactttagggcagttatttaaaat 229

                                                                       
Query: 124 tcttgctggtggttctgacaatggcttcctcatttttttttaaattaggtattttttcat 183
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 228 tcttgctggtggttctgacaatggtttcctcatttttttttaaattaggtattttttcat 169

                                                                       
Query: 184 ttacatttccaatactatcccacaagtcctcccatacccacctcaaccacacccccacaa 243
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 168 ttacatttccaatactatcccaaaagtcctcccatacccacctcaaccacacccccacaa 109

                                  
Query: 244 cctccaccacatcttgtccctgg 266
           || ||||||||||||||||||||
Sbjct: 108 ccaccaccacatcttgtccctgg 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 667
Length adjustment: 9
Effective length of query: 257
Effective length of database: 658
Effective search space:   169106
Effective search space used:   169106
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)