BAC Information

Click to search

BAC

Clone NameMSMg01-075H23
ChromosomeY (Build37)
Map Location 1,655,836 - 1,656,403
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143
Downstream geneLOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075H23.T7 (MSMg01no075_h23.b1)MSMg01-075H23.TJ (MSMg01no075_h23.g1)
ACCAG298298AG298299
length668674
length of high quality
(start - end)
43 (251 - 293)597 (78 - 674)
definitionCHROMAT_FILE: MSMg01no075_h23.b1 PHD_FILE: MSMg01no075_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:10 2005CHROMAT_FILE: MSMg01no075_h23.g1 PHD_FILE: MSMg01no075_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATTTGCGGCGCCANAGANNNCNATGTGCCTACTCGCNNGGAANNNNA
NACTTGCCGCACCCGCAGAANNNNNNNNGAAGANAANNAAAAGAAGAAGA
AAGGGATTACCCCCAGAGAGACAGNNAAAAGAAGAAAGGGAAAAAGGGCA
GGAAACAGAGAGAGGCAGGACGAGCAGAAAGACACCAGACGGAGCACCAG
AGACGACGAAAGACAGAAGACCCCGGACAGACGGCANACTTTTTTTAAGA
GAACACAAATGCCAGCCCAGGCTATTAAACCCAGCCAAACTCCCAACCAC
CACAGTTTTTGTCTTTTTAGAAACNCGCGACAAAAAACAAAGGCACACAG
GAACTCCCCCCCCCCCCAGCCAGACGAAGAAGAAGAACAGAAGAAAAAAA
GAGCCACACAAGGACAGGAACAACGCCCAAGAAAAAGCGAGACAGCAACC
CCCCACCAAACCGAAAAGAAGACAGCCACCAGACCAGAGGGCAGCCCCGA
GCACCCCACACAGCCGCGAGCACAGGAACGCAGCCCCAAAAGCCCCGCAC
ACCAAGGGGAGCCAGCGCCCACCCAACCAGAAACAGACAGGCGAACAAAA
ACGGAACCAACACCCCGGCGGCAACAGGAAAACACTTTTTTTTTTTTTTT
TCAGACACCGTCCCACGG
NAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAATAAACAAAATCTCTTCAATCTG
TCTCACCAATCATACATTAGGTCCAATGCTTGGGTGCTTTCTGTTTCAGG
CTCACAATGATCAATGGTATATACTTTCTAGGTTGTATAACTGCACTTCA
TTTCTCTACAGGAACCTTTCCTCAGATTCTGTCCTCATCAAGAATCCCAT
CTAATACCATCAGATACTTCTATGCATCAGAGGGAACAAGGTCTAGCTGT
GTGCCTTGCAGGTTGGGTAGAGCACTGTCAATATCCCTTCTCCTCCAGCA
AACCCTCTCAAGGCTCACAACGGTTGTCTTCCAGAATAAAATCTGATTGC
CTAAGAGAAGGAGCAAATCACCCCTGCTTGCTCTAATGTCTAAATGACAT
TGCAGATTAAGAAAAAACATGGAGCTTCCCTAAGATTCTCAGTCCGGAAG
CATTTGGACAATCCATTACTTTCATAGGGTCCAAAATTGTTTGAATTCTA
CAGACCAATGAATTGTCCCATTAGAAGCCAACTTTCCAGCAGGTAGCAGC
AGCTCCAACTGTTGTCTCCAAAGGCAGTTAAACAAAAGCAACCTGAAGAG
GCAGGTGAACTGCTCCTGGTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_h23.g1 MSMg01no075_h23.g1 CHROMAT_FILE:
MSMg01no075_h23.g1 PHD_FILE: MSMg01no075_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:10 2005
         (597 letters)



>mm_chrY_1655634_1656626
          Length = 993

 Score =  470 bits (243), Expect = e-136
 Identities = 498/591 (84%), Gaps = 35/591 (5%)
 Strand = Plus / Plus

                                                                       
Query: 3   aaacaaaatctcttcaatctgtctcaccaatcatacattaggtccaatg-cttgggtgct 61
           ||||||||| |||||||  ||||||| |||| || |||||||||||||| | |  |||||
Sbjct: 203 aaacaaaatgtcttcaaagtgtctcagcaattatgcattaggtccaatgtc-tcagtgct 261

                                                                       
Query: 62  ttctgtttcaggctcacaatgatcaatggtatatacttt-ctaggttgtataactgcact 120
            || | |||||||||||   ||| |||||| |||| ||| |||  |||||||||||||||
Sbjct: 262 ctcagcttcaggctcac---gattaatggtttata-tttgctaccttgtataactgcact 317

                                                                       
Query: 121 tca-tttctcta-caggaacctttcctcagattctgtcctcatcaagaatcccat-ctaa 177
            || ||| |||| | |||| ||| |||||||| ||||||||| |||| ||  ||| | ||
Sbjct: 318 acagttt-tctacctggaaacttgcctcagatcctgtcctcagcaaggat--catgc-aa 373

                                                                       
Query: 178 taccatcagatacttctatgc-atcagagggaacaaggtctagctgtgtgccttgcaggt 236
            ||||||||| | |||||||| | |||||||||||| ||||||||||||||| ||||| |
Sbjct: 374 caccatcagaaaattctatgcta-cagagggaacaaagtctagctgtgtgccatgcagtt 432

                                                                       
Query: 237 tgggtagagcactgtcaatatcccttctcctccagcaaaccctctcaag-gctcacaacg 295
           ||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||| |
Sbjct: 433 tggttagagcactgtcaatatcccttctcctccagcaaaccctctcaaatgctcacaaag 492

                                                                       
Query: 296 gttgtcttccagaata-aaatctgattgcctaagagaaggagcaaatcacc-cctgcttg 353
            ||||||||||  | | |||||||| ||||||| |||||||||||| || | ||  ||||
Sbjct: 493 tttgtcttcca--agacaaatctgagtgcctaaaagaaggagcaaagcatctcca-cttg 549

                                                                       
Query: 354 ctctaatgtctaaatgacattgcagattaagaaaaaacatggagc--ttccctaagattc 411
           ||| ||| |||||||| ||||||||||||||||||  | |  |||  ||||| |||||||
Sbjct: 550 ctccaatatctaaatgccattgcagattaagaaaatccct--agcagttccccaagattc 607

                                                                       
Query: 412 tcagtcc-ggaagcatttggacaatccattactttcatagggtccaaaattgtttgaatt 470
           ||||||| ||| |||||||| ||||| ||||||||||||||||||||| |||||||||||
Sbjct: 608 tcagtccagga-gcatttgggcaatctattactttcatagggtccaaacttgtttgaatt 666

                                                                       
Query: 471 ctacagaccaatgaattgtcccattagaagccaactttccagcaggtagcagcagctcca 530
           || |||||||||| ||||| ||||||||||||||||  ||||||||||||||| ||||||
Sbjct: 667 ctgcagaccaatgcattgttccattagaagccaactcaccagcaggtagcagctgctcca 726

                                                              
Query: 531 actgttgtctccaaaggcagttaaacaaaagcaacctgaagaggcaggtga 581
           |||| ||||||||| ||||  ||||||||||||       |||||||||||
Sbjct: 727 actgctgtctccaatggcacctaaacaaaagca-------gaggcaggtga 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 993
Length adjustment: 10
Effective length of query: 587
Effective length of database: 983
Effective search space:   577021
Effective search space used:   577021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)