BAC Information

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BAC

Clone NameMSMg01-081O08
ChromosomeY (Build37)
Map Location 1,649,178 - 1,649,617
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143
Downstream geneLOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081O08.T7 (MSMg01no081_o08.b1)MSMg01-081O08.TJ (MSMg01no081_o08.g1)
ACCAG302392AG302393
length695690
length of high quality
(start - end)		627 (42 - 668)621 (68 - 688)
definitionCHROMAT_FILE: MSMg01no081_o08.b1 PHD_FILE: MSMg01no081_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:14 2005CHROMAT_FILE: MSMg01no081_o08.g1 PHD_FILE: MSMg01no081_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:15 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCCCTTCCGCTAGACAACCAAAATGGCAGCTTACACCAACTATAGTTAG
AAGGTCCCCAAAACATACACAGAAAAAAAAATTCTTGGTCTCTGTTCAAT
CAGAAATGATGCAATGATTCTCAAGAACCTAGAGACCCCAGGGTGTTTAG
AAATCAGATGGAATGGGTACATGCTCTTGGAGACAGGGGCCAGTTGATAT
GGCATGTGGAACAGTAGGAGGGTGGACAGGGTTCAATGAATGAATGAATT
AATAAATAAAAAAGAATACTGCCAAGTAACCACGCCCCATATACTCTAAT
TCTTTAATCATAATCCAAGAAAACTCACATGTTCACATAACAGCACACTC
AAAAATATAACTAAAAAATACACACACACATATAACTGAAATTCCATGAT
TTTGAAGTTCATTTTACAAAGAAATACAGTGGAACAGAGTTTTTCTTTTG
TTCCATTAATTTACATACATTTGTTCTCCTAATCTACCCAAAATATGGAT
TGTTCTCCATATAAAAGGCCAAAATCTCCTAACATAGTTTTTATCTGGGA
AAATCTCCCAACATAATTTTATCTAGATCCACACCAATTATACCTTTCAT
TAGAATATAATCTGGATTCAGTTAGATATACCTTACATTTATATA

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGAAGAAAGACCAGTGGTGTGGGTAGCAGCAAA
GTTCTTGAGTCTCAAAGACAACAGATACCATGGCTGAATATTCCAACTAC
AACAACTAGGTAACATTGGTTCTACACTTAGCATGCCGTTTCTAGAAAAA
AAAATTAAAGAATTAAGCAATGTTTCCTCTGAACCTGACATGTTACTATC
ACAAATGAAAGAAGGATCCATGATCACATGAATATGAAAGGGGCATGAAG
CAGCACAATTGTTCAAATTATTGGCAGCTAGTCAGCATTAACACAAGAAG
GGACCAAAGACAATAAACAGCTTTGAAGACATGTCCAAATGACCGCGTTC
ATTTACAAGTTTCTTACCCATTCCTTGTATATCCATTGATTGATTAACTC
ATTGATTAAAGCCCTCAGGTTCCAATCACTTTTCAGAGTGCATATTGTAC
TACCTATGAACATTGTACTGTGGACCAAAGCCTTCATCTAAGACCCATGA
CTGACATTTCAAAACAATTTAACCACAGAATTCTTTTTTTGAAACAAAGT
GATAAGATCCATCTATCTCTTCAAGGATATCTCTGTTTTGTTCAAAAAGG
AGAAAAATGCAATCCAAGTTCAGGATCTTGATCCCTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_o08.b1 MSMg01no081_o08.b1 CHROMAT_FILE:
MSMg01no081_o08.b1 PHD_FILE: MSMg01no081_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:14 2005
         (627 letters)



>mm_chrY_1648606_1649630
          Length = 1025

 Score =  429 bits (222), Expect = e-124
 Identities = 393/468 (83%), Gaps = 42/468 (8%)
 Strand = Plus / Minus

                                                                        
Query: 93   cttggtctctgttcaatcagaaatgat---gcaatgattctcaagaacctagagacccca 149
            |||| ||||||||||||||||||||||    |||  ||||||||||| |||| |||||||
Sbjct: 1012 cttgatctctgttcaatcagaaatgatacaccaa--attctcaagaagctagtgacccca 955

                                                                        
Query: 150  gggtgtttagaaatcagatggaatg-ggt----acatgctcttggagacagg----ggcc 200
            || |||||||||||   ||||  || |||    ||||||||||||||| |||    || |
Sbjct: 954  ggctgtttagaaat---atgg--tgtggtagggacatgctcttggagataggggatgggc 900

                                                                        
Query: 201  agttgatatggcatgtggaacagtaggagggtggacagggttcaatgaatgaatgaatta 260
            ||| ||||||| |||| |||||||||||||||||||||||  |  || ||||||||||||
Sbjct: 899  agtagatatgggatgttgaacagtaggagggtggacaggg--c--tggatgaatgaatta 844

                                                                        
Query: 261  ataaataaaaaagaatactgccaagtaacca-cgccccatatactctaattctttaatca 319
            || |||||||||||||| |||||||||||||  ||||| |||||||||||| |  |||||
Sbjct: 843  attaataaaaaagaatagtgccaagtaaccagggcccc-tatactctaattgtggaatca 785

                                                                        
Query: 320  taatccaagaaaactcacatgttcacataacagcacactcaaaaatataactaaaaaata 379
             ||||||||||||||||||||| ||||||||| ||||||||||||              |
Sbjct: 784  gaatccaagaaaactcacatgtacacataacaacacactcaaaaa--------------a 739

                                                                        
Query: 380  cacacacacatataactgaaattccatgattttgaagttcattttacaaagaaatacagt 439
            |||||| || |||||||||||||  ||||||||||| ||||||||||||||||||||| |
Sbjct: 738  cacacatacctataactgaaattttatgattttgaaattcattttacaaagaaatacact 679

                                                                        
Query: 440  ggaacagagtttttcttttgttccattaatttacatacatttgttctcctaatctaccca 499
             |||||  ||||||||||||||||||||||||||||||||||| || |||| | ||||||
Sbjct: 678  agaaca-tgtttttcttttgttccattaatttacatacatttg-tcccctactataccca 621

                                                            
Query: 500  aaatatggattgttctccatataaaaggcc-aaaatctcctaacatag 546
            ||||| |||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 620  aaataaggattgttctccatataagaggccaaaaatctcctaacatag 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1025
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1015
Effective search space:   626255
Effective search space used:   626255
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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