BAC Information

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BAC

Clone NameMSMg01-082I12
ChromosomeY (Build37)
Map Location 1,098,473 - 1,098,907
singlet/doubletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082I12.T7 (MSMg01no082_i12.b1)MSMg01-082I12.TJ (MSMg01no082_i12.g1)
ACCAG302877AG302878
length701699
length of high quality
(start - end)
420 (45 - 464)437 (70 - 506)
definitionCHROMAT_FILE: MSMg01no082_i12.b1 PHD_FILE: MSMg01no082_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:01 2005CHROMAT_FILE: MSMg01no082_i12.g1 PHD_FILE: MSMg01no082_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGA
ATTCATGAATTTCCCTGCCAAATGGATGGACCTGGAGGGCTTCATCCTGA
GTGAGCTAACACATTCACAAAGGAATTCACACAACATGTACTCACTGATA
AGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTT
CCTAAACACATGAAACTCAAGAAAAATGAATACTGAAGTGTGGACACTAT
GCCCCTCCTTAGAAGTGAGAACAAAACACCCATGGAAGAAGTTACAGAGA
CAAAGTTTGGAGCTGAGATGATAGGATGGACCATGTAGAGACTGCCATAT
CCAGGGATCCACCCCATAATCAGCATCCAAATGCTGACACCATTGCATAC
ACTAGCAAGATTTTATCGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGA
CTATGCCGGGGCCTAGCAATCACAGAAGTGGATGCTCACAGTCAGCTAAT
GGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGCACCCAAGTA
GTTAAAGGGATCCGCAATCCTGTAGGTGAACAACATTATGAACTAACCAG
TACCCCGGAGCTCTTGACTCTAGCTGCATATGTTTCAAATGATGCGCTAG
TTGGCCATCACTGGAAAGAAAGGCCCATTGGACATGCCAACTTTATATGC
C
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTCTTCCCTACTTCAATACCTACATTATTT
TACTCAAACCACAGGCTCAGGTTTATTTGCAGAAAATAGAAGTGTCTATT
TTCCATCTCACTTGTACCCTTGGTTCATGTTCTGTATATCCCTTGAAAAA
CTTTTTGAGACATCAGATTGGGCACAGTGACATCCTGAAGGTGCAGCCTC
CTATAACCAAAGGTCTGAAAAATACAAGGTAAGAGAGACAGTGTAGACCC
TAGACTAATACCATATTTGAAACAATAAACACCTATAGTCTGTGGGTCCA
TCAGTGATGACTGTCAGGCAATCTTGCAGCCCTTTCCTTTCACTATTTAT
CAGATTTGTTGTCAGATGCACCATTTTCTTTTCCTGCTCCCTGGTGACAA
TTGTTGGGATAGGGGTTTGGGGCTACATAAGAACATTTTGCTTCCAGTTA
TTAGCGTCTGGTAGACACTGTACATAAAAGAACAAACTGGCAGTAATGCG
AAGTGTTGACCTGACATAAACTTGTAAATATCATTTCCCCCTCATTCCTG
ATTGTGCACTTTTGTCCCCATGTTACTCCTTCAATGAATGGTAAGAAGAA
AAGATAATAATTTACCGCATATAGCTTAAAGCTTGCCAGCTCCGTATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_i12.g1 MSMg01no082_i12.g1 CHROMAT_FILE:
MSMg01no082_i12.g1 PHD_FILE: MSMg01no082_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:01 2005
         (437 letters)



>mm_chrY_1098273_1099109
          Length = 837

 Score =  826 bits (427), Expect = 0.0
 Identities = 433/435 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcttccctacttcaatacctacattattttactcaaaccacaggctcaggtttatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 actcttccctacttcaatacctacattattttactcaaaccacaggctcaggtttatttg 576

                                                                       
Query: 61  cagaaaatagaagtgtctattttccatctcacttgtacccttggttcatgttctgtatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cagaaaatagaagtgtctattttccatctcacttgtacccttggttcatgttctgtatat 516

                                                                       
Query: 121 cccttgaaaaactttttgagacatcagattgggcacagtgacatcctgaaggtgcagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cccttgaaaaactttttgagacatcagattgggcacagtgacatcctgaaggtgcagcct 456

                                                                       
Query: 181 cctataaccaaaggtctgaaaaatacaaggtaagagagacagtgtagaccctagactaat 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 455 cctagaaccaaaggtctgaaaaatacaaggtaagagagacagtgtagacccaagactaat 396

                                                                       
Query: 241 accatatttgaaacaataaacacctatagtctgtgggtccatcagtgatgactgtcaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 accatatttgaaacaataaacacctatagtctgtgggtccatcagtgatgactgtcaggc 336

                                                                       
Query: 301 aatcttgcagccctttcctttcactatttatcagatttgttgtcagatgcaccattttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aatcttgcagccctttcctttcactatttatcagatttgttgtcagatgcaccattttct 276

                                                                       
Query: 361 tttcctgctccctggtgacaattgttgggataggggtttggggctacataagaacatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tttcctgctccctggtgacaattgttgggataggggtttggggctacataagaacatttt 216

                          
Query: 421 gcttccagttattag 435
           |||||||||||||||
Sbjct: 215 gcttccagttattag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)