BAC Information

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BAC

Clone NameMSMg01-084E04
ChromosomeY (Build37)
Map Location 1,926,909 - 1,927,521
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry
Downstream geneLOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084E04.T7 (MSMg01no084_e04.b1)MSMg01-084E04.TJ (MSMg01no084_e04.g1)
ACCAG304167AG304168
length695692
length of high quality
(start - end)
616 (46 - 661)530 (73 - 602)
definitionCHROMAT_FILE: MSMg01no084_e04.b1 PHD_FILE: MSMg01no084_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:14 2005CHROMAT_FILE: MSMg01no084_e04.g1 PHD_FILE: MSMg01no084_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:15 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCTCACATCCTGGCCCATACTCTCCAGAGGGCTGATTCTACTAA
GGCCTTATCCCTCTGTTCTACGGGATCCCCAGTTCATGACATATGTGCCA
TTTGTCAGGAAGTTGCAGAACCTCCACCCACATGTTTAGATAAACCATCA
CCTCTCACAGGTCTTCTAGATTCTACCATGTTGACTTGAGATGCCATTAT
TTTTTTAAAGTTCAGACTCCATTTTAGAGAACCTGACCTAAGTTTGAACT
CAGGTAAACTAACAGGCTGATACCTAGCATTAGTTTCCAAGTTGCCTCCC
AACAAAACCTGAGCCAAGCTCCAGTCTCTAGGCTAATCCCCACCAAGACC
AGAGTTTCCAGGTTACACCCTCAAGAAAACCAGCATCTCTAGGTTATTTC
CCCAAAAAACCTGCAGTCCAGGTTACAAGCCCAGCCCTTGACCAAAGACC
ACCAATGCAGAGGAGAGCAGAAGTTAAGCTTATGATATAACTCCCAGGAC
CAGGCAATTATGTTACAGACCACAGTAGATTTCCAGCTAGATGCTTGCAC
GCATTTTCCCAGCTTGCTGCTCCCCTACCACCAAAACATGCATGCTGCCA
TGTTCCTGCCTTGATGATAATAGACTGAACCAGTGTGCCAGCCCC
TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACCCTCCATTGCCATCCGAATTGGCAGA
AAATTTAACTTTCACAGAAACACATGTAGAATAAGCCTCCTAGTAGTATA
GTCAGATTATGTATCTGAAATGTGACCACCAAATAGCCAACACATTTTCA
GAAAGTTGGTATGTTTCATAATAGTAAATGATATTACTAAAAAGGGAATT
TCCTATATATCAATTAAAATAGTTTCCTCTTACATACTTCATTAATATGA
AAAAAATACTTGTAGGTGTATATATAGGGGAAAAAAATTGCGTCAAAAAA
TAAATCCACGGACTCTAAGTGAAGTTAATGGAATATAAAGCTGTTCCGCA
TGCATCACTAGCAAGGGAGATTATCAACCTATTGTTTAACTACTTTTAGT
ATAAATTTCACTGTGAACTATCACAGATCATCAAAATAGAAATTGGAAAT
AAGTTGGGTATTTAGTCTACTGCACATAATTTTTGGGCACCAGATTGTCA
CTGTAATTTCTTGGTCTGTCATTTATTTCCTATCTTCACAAGATTACATA
TAATGAAAAGAATATTTATCACGAAATTCTTGTAGGTAAATTTATTGAAT
GATTATAAGCATTTATATCTTTCCTCTGCTGTCAAGAAATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_e04.b1 MSMg01no084_e04.b1 CHROMAT_FILE:
MSMg01no084_e04.b1 PHD_FILE: MSMg01no084_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:14 2005
         (616 letters)



>mm_chrY_1926706_1927721
          Length = 1016

 Score = 1170 bits (605), Expect = 0.0
 Identities = 611/613 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacctcacatcctggcccatactctccagagggctgattctactaaggccttat 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacctcacattctggcccatactctccagagggctgattctactaaggccttat 263

                                                                       
Query: 64  ccctctgttctacgggatccccagttcatgacatatgtgccatttgtcaggaagttgcag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccctctgttctacgggatccccagttcatgacatatgtgccatttgtcaggaagttgcag 323

                                                                       
Query: 124 aacctccacccacatgtttagataaaccatcacctctcacaggtcttctagattctacca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacctccacccacatgtttagataaaccatcacctctcacaggtcttctagattctacca 383

                                                                       
Query: 184 tgttgacttgagatgccattatttttttaaagttcagactccattttagagaacctgacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgttgacttgagatgccattatttttttaaagttcagactccattttagagaacctgacc 443

                                                                       
Query: 244 taagtttgaactcaggtaaactaacaggctgatacctagcattagtttccaagttgcctc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taagtttgaactcaggtaaactaacaggctgatacctagcattagtttccaagttgcctc 503

                                                                       
Query: 304 ccaacaaaacctgagccaagctccagtctctaggctaatccccaccaagaccagagtttc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccaacaaaacctgagccaagctccagtctctaggctaatccccaccaagaccagagtttc 563

                                                                       
Query: 364 caggttacaccctcaagaaaaccagcatctctaggttatttccccaaaaaacctgcagtc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caggttacaccctcaagaaaaccagcatctctaggttatttccccaaaaaacctgcagtc 623

                                                                       
Query: 424 caggttacaagcccagcccttgaccaaagaccaccaatgcagaggagagcagaagttaag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caggttacaagcccagcccttgaccaaagaccaccaatgcagaggagagcagaagttaag 683

                                                                       
Query: 484 cttatgatataactcccaggaccaggcaattatgttacagaccacagtagatttccagct 543
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 684 cttatgatataactcccaggaccaggcaattatgttacagaccacagtagatttccagtt 743

                                                                       
Query: 544 agatgcttgcacgcattttcccagcttgctgctcccctaccaccaaaacatgcatgctgc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agatgcttgcacgcattttcccagcttgctgctcccctaccaccaaaacatgcatgctgc 803

                        
Query: 604 catgttcctgcct 616
           |||||||||||||
Sbjct: 804 catgttcctgcct 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)