BAC Information

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BAC

Clone NameMSMg01-103G06
ChromosomeY (Build37)
Map Location 2,793,960 - 2,794,206
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103G06.T7 (MSMg01no103_g06.b1)MSMg01-103G06.TJ (MSMg01no103_g06.g1)
ACCAG318269AG318270
length719711
length of high quality
(start - end)
245 (73 - 317)449 (79 - 527)
definitionCHROMAT_FILE: MSMg01no103_g06.b1 PHD_FILE: MSMg01no103_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:18 2005CHROMAT_FILE: MSMg01no103_g06.g1 PHD_FILE: MSMg01no103_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:18 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAAAAACTTCCTGAAGACCAGTCTTCATTTTCCTTTACCTGGTT
TTGAAAGGCCAGATTTCCAAAATTTGCGTATATAGGCGCCAAAGTGCTTC
CAAATCCAGAGGCTCCTCTCAACCTCAGAAGAGCTGGTACTTCAGACATG
ATTCAGGGAAGGCTGTGTTTATGTATGTGTTGTTTTGGTATAGGAAGGTA
AGCTCTAACTCTGTATCTCAGTATTATCTTAGCACATGTGCAGTTTGGAC
TGGCCTTGAAAATGAAGTATTCAGTCTTACAAATTTACTGGGGCTTAAGG
AAACATGTCTTCTATATTTTTTATACTTACCATTTTATTTTTTATTTATC
TATTTTTTCACTGTTTGAAGACTGAATCCAGAGCTTCTTTGTGCAGCTTT
ACTATATAAGTCCAGTCAGGCTAACAGTATCTTCATTAACATCTCGCTCC
AACTCCCCTTATTACCAATTGTTTATATACCCCTGTTGCATTATTCAACC
CATAACCGATTCTTCAGTAACTAATGCTAATTATTATGTTTATCCCGACC
AATTAATTGCATATACATTCGTATCCGCCTACATCTATTATTTTCTTTTT
CATTGCCATTTTTCTATTCTATTTTTATCCGATTGCCTCCCCGTATTTCC
CTTATACCTCTTTTTTACG
TCTCTCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTATATTTTGAATATTAGC
CTTCGATCAGATGTAGGGTTAGTAAAGAACTTTTCTCCATTACTAGGTTG
CCATTTTGTCCTATTGACAGTGTCCTTTGCCTTACAGAACCTTTTCAGTT
TCAGAAGGTCCCATTTGTTAATTGACCAAGATATGCTTTCAGACATGAAC
ATGGCATGACTGTCCTAAAAGAGGCTATGCCATCAACTGACTGAGACAGA
TGCAGATATTTACAGCCAATCATTGGTCTAAACCCAGGAACCCCTATGGA
AGAGTTTGATCAAAGACTGAAGGAACTGAAGGGAATTACAACCCTATTGG
AAGAACAACACCATGAAAAAACTAGATTTCTCAGAATTCTCAGGTACTAA
GCCACCAATCAAAAAGCATACATGTACTAGTACATAACCCCTACTATACA
TATGTAGCAGAGGATTGCATTGTCTGGTCTCAGTGCGATGAGGGTGTGTG
CTTGTCCTGTGGAAGCTTTATGTCCCCAGAACAGCTGAATTCTATAGAGT
TCGGCGGGAGAGTAATATTTTAGAGAATGGACGCAAAGTCTGCTTTACTC
CCCTTTCCCAATCCTTTTTTTCTTCCCTCTCTTTACCCTCCTCACCATCC
CTCCTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_g06.b1 MSMg01no103_g06.b1 CHROMAT_FILE:
MSMg01no103_g06.b1 PHD_FILE: MSMg01no103_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:18 2005
         (245 letters)



>mm_chrY_2793760_2794406
          Length = 647

 Score =  404 bits (209), Expect = e-117
 Identities = 237/247 (95%), Gaps = 2/247 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accagtcttcattttcctttacctggttttgaaaggccagatttccaaaatttgcgtata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 447 accagtcttcattttcctttacctggttttgaaaggccagatttccaaaatttgcatata 388

                                                                       
Query: 61  taggcgccaaagtgcttccaaatccagaggctcctctcaacctcagaagagctggtactt 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 taggcgccaaagtgcttctaaatccagaggctcctctcaacctcagaagagctggtactt 328

                                                                       
Query: 121 cagacatgattcagggaaggctgtgtttatgtatgtgttgttttggtataggaaggtaag 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cagacataattcagggaaggctgtgtttatgtatgtgttgttttggtataggaaggtaag 268

                                                                       
Query: 181 ctctaactctgtatctcagtattatctta--gcacatgtgcagtttggactggccttgaa 238
           | |||||||| |||||||||||||||| |  | |||||| ||||||||||||||||||||
Sbjct: 267 cactaactctatatctcagtattatctcaaagtacatgtacagtttggactggccttgaa 208

                  
Query: 239 aatgaag 245
           |||||||
Sbjct: 207 aatgaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 647
Length adjustment: 9
Effective length of query: 236
Effective length of database: 638
Effective search space:   150568
Effective search space used:   150568
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)