BAC Information

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BAC

Clone NameMSMg01-107D22
ChromosomeY (Build37)
Map Location 1,266,198 - 1,266,913
singlet/doubletsinglet
Overlap genenone
Upstream geneJarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107D22.T7 (MSMg01no107_d22.b1)MSMg01-107D22.TJ (MSMg01no107_d22.g1)
ACCAG321110AG321111
length1,2501,209
length of high quality
(start - end)
342 (131 - 472)704 (131 - 834)
definitionCHROMAT_FILE: MSMg01no107_d22.b1 PHD_FILE: MSMg01no107_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:51 2005CHROMAT_FILE: MSMg01no107_d22.g1 PHD_FILE: MSMg01no107_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:51 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNAACGAATTTNNNNNNACAGCATTGGGCGCTATAGACTCCTATAGGGAG
AGGATCCGCGGAATTCCTGATGGGCAATGGTCCTGTTATTGGGAGTGAAT
GCTGGACCAAGACTCTTCTCTAACATATACTTCTGAGCAGGTGAAGAAGA
TTATGCTAAACAGTTTTGAGCTCCTAAAATTAATTTTATAAAAATAAGAA
GTTAATAAGTCAGCCATGGTGGTACACGCATTTAATCCCAGAACTCAGAA
GGCAAGGACAGGCAGATTTCTAAATTAGAGACCAGCCTGGTCTAAAAAGT
GAGTTCCAGGGCAGTCAGTGCTATAGAGAGGAACCCTGTCTCAACAACAA
AAACAACAACAACAACATCAAGTAAAAGAAAACAAATGAAAATCAAACGA
AAAACAAACAAAACAGATATACAAACAAAAAATAACAAAACAAACAATCA
AATGGAGAAGTTAATAGGAAGTGGTAGCGACCCATAACTTTAATCATAGT
ACTCAAGAAGCAGAGTGAGGCAGACCTTAGTGAGAGAAAGACTAGTCTGG
TCTACACAGTCAGTTTCCTGACAGCCAAATCTAAACATACAGAAACTCAA
ATAAAATTAACCAAGCAAGCAAACAAACAAACAAAGAAACAAAGAAACTA
GGGAAACAAGGAAATAAAAATAGTGTAATTAACAAGTAATTCTCTAGAGC
TCAGAATAACATACTCAGATCAACATTTATTTCTTCAGACCTGAGTAAAT
TTGTCTCTGATGAAGATCCTCTCCTTGAATTTCTATGTCAATTTAGGTGG
TGCTATGAACATTACCCCCAATGATCTAGAATAATAGAAACATTATATAC
AAGGCCAGAGTGGTCACCATGATTCCTCTTGTACCCTTAAGCTTCTGAGC
TAATTTTCTTGCATTCCCCAAAATAATTTTCCCAGGTAACACCGTCACAA
CCACGGTCCCTTCTTTAATGGTTTCCTCCTGGACCCCAGCTTTCTAAATT
TATTTCGATGAATCCCATTTGCATCCCCTGAACCTTCATAAACCAACTTT
AAAAACGTCCAAGGTCTATTTTCCTCTCTTTTTAAAAACTAAATAACTTT
CTTACAATGTATCCTTTGTCCTACTTGTGAAACCTTTTGCTACTTTTTAA
GGGCGAATTTGTTGCATCCAAAATTATGGCTTAGCTCACGGTTATTATAC
ATTTTCCTGTCGAAATATAATCTTATACCTATATACCACTTTCTCTTCCT

NCAAAATTTTNNNNAAAAGATTGTGTAGCTGGGGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTATCAAAAAAATTTG
TATGAAGTTCTCAAGGAATTAACCATTGTAGTTCTTAATATACAATGTCT
GTACTGAACATATACAGATCACTTATATTTCAATCTCCTAAATAGCAACT
CATTTTGTAGCACTTACATTACATTAAGTGCAAAAGTAATCCAGAGATTA
TTTAAAATAAAGAAGGATCAGGGGATATGGCCCAGAGACAATGCCATGTG
TGTGTTCAAACATTCACCTACAACACCAGTGCTTATGATTTTGGGAGGGG
CAGAGATAGGAAGATGACTGTGGCTTTCTGAAAGCCAGCTCAGCAAGAAA
CCCAGTCACAAGGATATAAGTTATGTAGGAAAAGAGTAGATCACACTATA
CCCTTCCCTAGCCTCTGAACTTACCTGTACAGTTCTCTATGCAGACTCAC
ATAAATATGATTAAAATATGCAAGAGGTTATTTTACATAGCTTATATTCA
AAAGCAATGTTGTTTTAGACTAGAAACCTGAGGACTTTATATCATTATAG
TTCCTGGAGCAAACTCCCAAGATATAGATGATGGGTATATCTTCTTACTG
TGCAAAGGAAACCTCAGTTAAGTGTGTGTGTCAGTGACTCCAAACAGCTT
TCCTCCTCTATGTTCCTTTATATAGCATAGAATGATCTGTAAATAATGAA
AATATGAAAACAAAGCTTTTTTGAGATTTTAGGCTTGTGTTAAAATCATA
TTTATAACCTTGCATTAAATGGAAGTGAAATCTTCAGCTCTCAGGAACAA
TACAGTCAATGCTGTAGGCTTCTGTTTTTGTCCATTGTGAACAAAATTAA
TTGCACATCAACAGGTCCCCACCTTTTTAACTAAATCAGGAAAAAGGGCT
ATGTTTCCCGTACAAATAAATAATGTCAATGTGATTATTTCAAGTAGAAA
TCTGGCCAGGGTAAAGATTGCGTTTGGCTTTATGCCATAACGAAAGACCT
GATTAATCTCCTTGTTTATTCAAAAAAACCCCTTACCCTCTTAAAAAAAA
GACAAGTTAATGGGTTTTTAAAATTATACCTTCCAAAGTGGGACATTGGA
AACCCCTTATTAACCTAAAATTTTCCTTTTTCCCTTTTTACACAAACTTT
ATAGTGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_d22.g1 MSMg01no107_d22.g1 CHROMAT_FILE:
MSMg01no107_d22.g1 PHD_FILE: MSMg01no107_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:51 2005
         (704 letters)



>mm_chrY_1266007_1267113
          Length = 1107

 Score =  640 bits (331), Expect = 0.0
 Identities = 622/733 (84%), Gaps = 46/733 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttcttaatatacaatgtctgtactgaacatatacagatcacttatatt-tcaatctcct 59
           ||||||||||||| |||||||||||||||||||||||| |||||||||| || |||||||
Sbjct: 192 gttcttaatataccatgtctgtactgaacatatacagaccacttatattgtc-atctcct 250

                                                                       
Query: 60  aaatagcaactc--attttgtagcacttacattacattaagtgcaaaagtaatccagaga 117
           ||||| ||||||  |   | ||||| || |||| ||||||| |||||||| |||||||||
Sbjct: 251 aaataacaactccta---tatagcagtttcattgcattaagggcaaaagtcatccagaga 307

                                                                       
Query: 118 ttatttaaaataaagaaggatcaggggatatggcccagag--acaatgcc-atgtgtgtg 174
           | |||||||||||||||||||||||  | ||||||||| |  | || ||| || ||| ||
Sbjct: 308 tcatttaaaataaagaaggatcaggcaagatggcccaggggta-aa-gccaat-tgtttg 364

                                                                       
Query: 175 ttcaaacattcacctacaacaccagtgcttatgattttgggaggggcagagataggaaga 234
            ||| ||||||||||| |||| ||||||| | ||  | |||||||||||||| || ||||
Sbjct: 365 gtcagacattcacctataacaacagtgctcagga--tggggaggggcagagacagaaaga 422

                                                                       
Query: 235 tgactgtggctttctgaaagccagc------------tcagcaagaaacccagtcacaa- 281
            ||||||||||| |||||||| |||            |||||||||||||| |||| || 
Sbjct: 423 agactgtggcttcctgaaagcaagcctcactcctaggtcagcaagaaaccctgtcataag 482

                                                                       
Query: 282 ggatataagttatgtagga---aaagagtagatcacactatacccttccctagcctctga 338
           ||| | || ||| |  |||   || ||| ||| |||||| |||| |||||| ||||||||
Sbjct: 483 gga-acaaatta-g--ggagtgaaggagcagaacacactgtacctttccctggcctctga 538

                                                                       
Query: 339 acttacctgtacagttctctatgcagactcacataaatatgattaaaatatgcaagaggt 398
           | |||||||||||| ||| |||||| || |||||||||||||||||| ||| ||||||||
Sbjct: 539 atttacctgtacaggtctgtatgcacacacacataaatatgattaaagtatacaagaggt 598

                                                                       
Query: 399 tattttacatagcttatat-tcaaaagcaatgttgttttagactagaaacctgaggac-t 456
           || ||| ||||| |||||| | ||||||||||||||||||| ||||| |||||||||| |
Sbjct: 599 tactttgcatagattatatgt-aaaagcaatgttgttttagcctagagacctgaggactt 657

                                                                       
Query: 457 ttatatcattatagttcctggagcaaactcccaagatatagatg---atgggtatatctt 513
           |||||||||||  | ||||||||||||||||| | ||||||| |   |||||||||||||
Sbjct: 658 ttatatcattaggggtcctggagcaaactccccatatataga-gagaatgggtatatctt 716

                                                                       
Query: 514 cttactgtgcaaaggaaacctcagttaagtgtgtgtgtcagtgactccaaacagctttcc 573
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 cttactgtgcaaaggaaacctcagttaagtgtgtgtgtcagtgactccaaacagctttcc 776

                                                                       
Query: 574 tcctctatgttcct-ttatatagcatagaatgatctgtaaataatgaaaatatgaaaaca 632
           |||||||  ||||| || ||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 777 tcctctaaattcctatt-tatagcacagaatgatctgtaaataatgaaactatgaaaaca 835

                                                                       
Query: 633 aagctttttt-gagattttaggcttgtgttaaaatcatatttataaccttgcattaaatg 691
           |||||||||  | | ||| |||||||||||||||||||||||||||| ||  ||||||||
Sbjct: 836 aagctttttcagggcttt-aggcttgtgttaaaatcatatttataacgttttattaaatg 894

                        
Query: 692 gaagtgaaatctt 704
           |||| ||||||||
Sbjct: 895 gaagggaaatctt 907


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1107
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1097
Effective search space:   761318
Effective search space used:   761318
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)