BAC Information

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BAC

Clone NameMSMg01-117C15
ChromosomeY (Build37)
Map Location 2,793,997 - 2,794,224
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117C15.T7 (MSMg01no117_c15.b1)MSMg01-117C15.TJ (MSMg01no117_c15.g1)
ACCAG328365AG328366
length711714
length of high quality
(start - end)
239 (80 - 318)228 (75 - 302)
definitionCHROMAT_FILE: MSMg01no117_c15.b1 PHD_FILE: MSMg01no117_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:37 2005CHROMAT_FILE: MSMg01no117_c15.g1 PHD_FILE: MSMg01no117_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTCACCTGTCTTAGAAGAGACAGTGTTGGTATTTGAGTCACAG
TCCTTTTTTCTAGCCTCTGTCAGCCACTGTTTTCCATCCCGGAGAGTATA
TCCCAAGTAGACTACTTCTATGTGACATAGCTGGGCTTTTTTAGCAGAGG
CCCATTAACCCAACTCACCCAGTTCGCCTAGCAATCTCTTGGTCTCCTGC
CAGAATTCTCTCTCCGTGGCTGCATCAAGGAGCAAGTCATCATCACATTG
AAGCACAGTTATCTGGCAGTTTTCTTTTCATAAGGAGGCTAAATCTCGAT
GTAGAGACTTATGATAAAGGTCGCCCGAGCCTTTGAACCCCTGGGTTAAT
CGCTTCATGGTCAATTGTACCATTTGTCCCATGTCAAGATCTCTCCTCTC
AAAGGTCAATATGGGTTGGCAGGAGGGATGTAAATTCAGGTAAAAGAAAG
CATATTTTTTACAAGACGGACTGTGTATCTTTTTTGTTTAGATAGACGTG
ACCTGAGTAGGCTATAGAGTATATCTAACCGCTGGGCTAATCTTTTGAAC
CCTCCTAATAGATCCCCCTCACGACATTGGGATGGATAATATTCCCCAGG
CTGCCTGGTTTCTTTGCCAACCGCCACAAGAATTTTTCTATGGTGTTTGA
CTAAGGTACCC
TACAATGTAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCAGAAATTCATTAAAAACAAACTGAAGACCAGTCC
TCATTTTCTTTTACCTGGTTTTGAAAGGCCAGATTTTCATAATTTGCATA
TAAAGGCCCCAAATTGATTCCAAATCCAGAGGCTCCTCTCAACCTCCAAA
GAGCTGGTACTTCAGACATAATTCAGGGAAGGCTGTGTTTATGCACGTGT
TGTTTTGATATAGGAAGGTAAGCTCTAACTCTATATCTCAGTATTATCTC
AAAGTATATGTGCAGATTGGACTGTTCTTGAAAATGAAGTACTCAGCCTG
ACAAATTTACTGGGGCCTAAGGAAAACACGCCTTCTATATTTTTTATACT
TAAATTTTATATTTTATTTATTTATTATTTATTGTTGAAGATTGAATCCC
GAGCTTCTTTGTGTAGCATTAACATATAACTCCAGTCAAGCGAAAAAGTA
ATTCATTACTAACTGACAAAAAAAAAACTTCGTATAAATAACCATGTTGG
ACAACCATCCAAAAACAAAAACTCCATAATCTAATGATAATTATAATGCT
AATTTTTGAAAAATCAATTGGATATACACGGAAAAATTTACCAACCCTAA
TAATCCCCTCCCTAGCGCATTTCACACCAAGAAAAACTGATATGCTATGC
CATGCTCTTCTCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_c15.g1 MSMg01no117_c15.g1 CHROMAT_FILE:
MSMg01no117_c15.g1 PHD_FILE: MSMg01no117_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:37 2005
         (228 letters)



>mm_chrY_2793797_2794424
          Length = 628

 Score =  327 bits (169), Expect = 4e-94
 Identities = 214/229 (93%), Gaps = 2/229 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaaaacaaactgaagaccagtcctcattttcttttacctggttttgaaaggccagat 60
           ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 428 attaaaaacaaactgaagaccagtcttcattttcctttacctggttttgaaaggccagat 369

                                                                       
Query: 61  tttcataatttgcatataaaggccccaaattgattccaaatccagaggctcctctcaacc 120
           || || |||||||||||| |||| ||||| || ||| |||||||||||||||||||||||
Sbjct: 368 ttccaaaatttgcatatataggcgccaaagtgcttctaaatccagaggctcctctcaacc 309

                                                                       
Query: 121 tcca-aagagctggtacttcagacataattcagggaaggctgtgtttatgcacgtgttgt 179
           | || ||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 308 t-cagaagagctggtacttcagacataattcagggaaggctgtgtttatgtatgtgttgt 250

                                                            
Query: 180 tttgatataggaaggtaagctctaactctatatctcagtattatctcaa 228
           |||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 249 tttggtataggaaggtaagcactaactctatatctcagtattatctcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)